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Investigación

Biología Computacional

Líneas de investigación

Contenidos con Investigacion Biología Computacional .

Biología Computacional

  • Uso de la Biología Computacional para investigación de mecanismos moleculares alterados en enfermedades crónicas (neurodegeneración y cancer) que puedan contribuir a prevenir, diagnosticar precozmente, y tratar la enfermedad de manera individualizada. 
  • Búsqueda e interpretación de vías de señalización, variantes génicas y genes biomarcadores obtenidos por técnicas de secuenciación profunda y técnicas de genotipado masivo.

Proyectos de investigación

Contenidos con Investigacion Biología Computacional .

  • 2022-2025: Modelos humanos neurales para estudiar la evolución celular y proteómica en la enfermedad de Alzheimer. PI22/00055. Proyecto de Acción Estratégica en Salud Intramural. PI I Liste, CoIP V. López-Alonso.
  • 2022-2024: CAM Ayudas para la contratación de técnico de Garantia Juvenil
  • 2022-2025: Medicina Personalizada (MedPer) en la detección precoz del deterioro cognitivo (DC) preclínico. Desarrollo de un modelo predictivo de riesgo. PMP22/00084. Proyectos de Investigación de Medicina Personalizada de Precisión de la Acción Estratégica en Salud. IP. A. Almeida Parra.
  • 2022-2025: Implicaciones de la proteína precursora amiloide (APP): neurodesarrollo y enfermedad de Alzheimer. PID2021-126715OB-I00. Programa Estatal de I+D+i Orientada a los Retos de la Sociedad. Ministerio de Ciencia e Innovación. PI I. Liste
  • From 2017-2022. Project MinE International groundbreaking genetic ALS research (www.projectmine.com).
  • 2020 – 2022: ELA-BASE: Una cohorte para un estudio piloto longitudinal de Medicina de Precisión en Esclerosis Lateral Amiotrófica (ELA). UFIECPY 354/19-TS.Actividad Singular dentro del Programa de prestación de servicios científico-técnicos en los centros del ISCIII. Programa Intramural 2019 ISCIII. PI Y. Campos.
  • 2020–2021: Spanish Ministry of Economy and Competitiveness: Ayudas para la contratación de estudiantes, Garantia Juvenil. V. López-Alonso
  • 01/04/2015 - 01/04/2021: New therapeutic strategies for resistant colorectal cancer. Fundación Científica de la Asociación Española Contra el Cáncer. CGB14142035THOM.  PI JM Rojas. 
  • 2017-2020: MicroRNAs y marcadores de metabolismo lipídico como potencial enlace entre la disfunción vascular y la patofisiología de la enfermedad de Alzheimer. SAF2016-78603-R MINECO. PI M Medina.
  • 2017-2020: Papel fisiológico de la proteína Shoc2/Sur8 y estudio de su implicación en patologías humanas. SAF2016-78852-R MINECO. PI JM Rojas.
  • 2019: Proyecto MinE: del análisis biocomputacional de genomas de pacientes con Esclerosis Lateral Amiotrófica al desarrollo de un modelo de motoneurona diferenciada a partir de células madre pluripotenciales inducidas obtenidas de cultivos de fibroblastos humanos de origen dérmico. GGVP 345/18 FUNDELA. IP Y Campos.
  • 2011-2013. IMBIOMEDvision: Promoting and Monitoring Biomedical Informatics in Europa Grant agreement no: 270107 Comisión Europea. IP V López-Alonso
  • 2011-2012. COMBIOMED. Red Temática de Investigación Cooperativa en Biomedicina Computacional RD07/0067/00 Fondo de Investigación Sanitaria. Instituto de Salud Carlos III. IP y Coordinación V. López-Alonso
     
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Dendritic Cells and Microglia Have Non-redundant Functions in the Inflamed Brain with Protective Effects of Type 1 cDCs

Dendritic Cells and Microglia Have Non-redundant Functions in the Inflamed Brain with Protective Effects of Type 1 cDCs. Cell Reports 2020. Contributors: Gallizioli, M.; Miró-Mur, F.; Otxoa-de-Amezaga, A.; Cugota, R.; Salas-Perdomo, A.; Justicia, C.; Brait, V.H.; Ruiz-Jaén, F.; Arbaizar-Rovirosa, M.; Pedragosa, J. et al.

DOI

CD45 expression discriminates waves of embryonic megakaryocytes in the mouse

CD45 expression discriminates waves of embryonic megakaryocytes in the mouse. Haematologica 2018 |Contributors: Cortegano, I.; Serrano, N.; Ruiz, C.; Rodríguez, M.; Prado, C.; Alía, M.; Hidalgo, A.; Cano, E.; de Andrés, B.; Gaspar, M. L.

DOI

Role of Amyloid Precursor Protein (APP) and Its Derivatives in the Biology and Cell Fate Specification of Neural Stem Cells.

Role of Amyloid Precursor Protein (APP) and Its Derivatives in the Biology and Cell Fate Specification of Neural Stem Cells. Mol Neurobiol 2018 Contributors: Coronel, R.; Bernabeu-Zornoza, A.; Palmer, C.; Muñiz-Moreno, M.; Zambrano, A.; Cano, E.; Liste, I.

DOI

Altered marginal zone and innate-like B cells in aged senescence-accelerated SAMP8 mice with defective IgG1 responses

Altered marginal zone and innate-like B cells in aged senescence-accelerated SAMP8 mice with defective IgG1 responses. Cell Death & Disease 2017 | Contributors: Cortegano, Isabel; Rodriguez, Mercedes; Martin, Isabel; Carmen Prado, Maria; Ruiz, Carolina; Hortiguela, Rafael; Alia, Mario; Vilar, Marcal; Mira, Helena; Cano, Eva et al.

DOI

Senescent accelerated prone 8 (SAMP8) mice as a model of age dependent neuroinflammation

Senescent accelerated prone 8 (SAMP8) mice as a model of age dependent neuroinflammation. Journal of Neuroinflammation.2021-12. Contributors: Andrés Fernández; Elena Quintana; Patricia Velasco; Belén Moreno-Jimenez; Belén de Andrés; Maria Luisa Gaspar; Isabel Liste; Marçal Vilar; Helena Mira; Eva Cano.

DOI

The TLR4-MyD88 Signaling Axis Regulates Lung Monocyte Differentiation Pathways in Response to Streptococcus pneumoniae

The TLR4-MyD88 Signaling Axis Regulates Lung Monocyte Differentiation Pathways in Response to Streptococcus pneumoniae. Frontiers in Immunology 2020. Contributors: Sánchez-Tarjuelo, R.; Cortegano, I.; Manosalva, J.; Rodríguez, M.; Ruíz, C.; Alía, M.; Prado, M.C.; Cano, E.M.; Ferrándiz, M.J.; de la Campa, A.G. et al.

DOI

NFATc3 controls tumour growth by regulating proliferation and migration of human astroglioma cells

NFATc3 controls tumour growth by regulating proliferation and migration of human astroglioma cells. Scientific Reports 2019-06-27. Contributors: Katia Urso; Andrés Fernández; Patricia Velasco; Javier Cotrina; Belén de Andrés; Pilar Sánchez-Gómez; Aurelio Hernández-Laín; Sonsoles Hortelano; Juan Miguel Redondo; Eva Cano

DOI

Aβ42 Peptide Promotes Proliferation and Gliogenesis in Human Neural Stem Cells

Aβ42 Peptide Promotes Proliferation and Gliogenesis in Human Neural Stem Cells. Mol Neurobiol 2018 | Contributors: Bernabeu-Zornoza, A.; Coronel, R.; Palmer, C.; Calero, M.; Martínez-Serrano, A.; Cano, E.; Zambrano, A.; Liste, I.

DOI

Neuronal and Glial Differentiation of Human Neural Stem Cells Is Regulated by Amyloid Precursor Protein (APP) Levels

Neuronal and Glial Differentiation of Human Neural Stem Cells Is Regulated by Amyloid Precursor Protein (APP) Levels. Mol Neurobiol 2018 | Contributors: Coronel, R.; Lachgar, M.; Bernabeu-Zornoza, A.; Palmer, C.; Domínguez-Alvaro, M.; Revilla, A.; Ocaña, I.; Fernández, A.; Martínez-Serrano, A.; Cano, E. et al.

DOI

DNGR-1 in dendritic cells limits tissue damage by dampening neutrophil recruitment

DNGR-1 in dendritic cells limits tissue damage by dampening neutrophil recruitment. Science 2018-10-19 | Contributors: Carlos del Fresno; Paula Saz-Leal; Michel Enamorado; Stefanie K. Wculek; Sarai Martínez-Cano; Noelia Blanco-Menéndez; Oliver Schulz; Mattia Gallizioli; Francesc Miró-Mur; Eva Cano et al.

DOI

DNGR-1(+) Dendritic Cells are Located in Meningeal Membrane and Choroid Plexus of the Noninjured Brain

DNGR-1(+) Dendritic Cells are Located in Meningeal Membrane and Choroid Plexus of the Noninjured Brain. Glia 2015 | Contributors: Quintana, Elena; Fernandez, Andres; Velasco, Patricia; de Andres, Belen; Liste, Isabel; Sancho, David; Luisa Gaspar, Maria; Cano, Eva.

DOI

NFATc3 promotes Ca2+-dependent MMP3 expression in astroglial cells

NFATc3 promotes Ca2+-dependent MMP3 expression in astroglial cells. Glia 2013 | Contributors: Neria, Fernando; del Carmen Serrano-Perez, Maria; Velasco, Patricia; Urso, Katia; Tranque, Pedro; Cano, Eva

DOI

An update on human stem cell-based therapy in Parkinson’s disease

An update on human stem cell-based therapy in Parkinson’s disease. Current Stem Cell Research and Therapy 2016 | Contributors: González, C.; Bonilla, S.; Flores, A.I.; Cano, E.; Liste, I.

DOI

NFAT transcription factors regulate survival, proliferation, migration, and differentiation of neural precursor cells

NFAT transcription factors regulate survival, proliferation, migration, and differentiation of neural precursor cells. Glia 2015 | Contributors: Serrano-Pérez, M. C.; Fernández, M.; Neria, F.; Berjón-Otero, M.; Doncel-Pérez, E.; Cano, E.; Tranque,

DOI

Regulator of calcineurin 1 (Rcan1) has a protective role in brain ischemia/reperfusion injury

Regulator of calcineurin 1 (Rcan1) has a protective role in brain ischemia/reperfusion injury. Journal of Neuroinflammation 2012 | Contributors: Sobrado, Monica; Ramirez, Belen G.; Neria, Fernando; Lizasoain, Ignacio; Lourdes Arbones, Maria; Minami, Takashi; Miguel Redondo, Juan; Angeles Moro, Maria; Cano, Eva

DOI

A critical review to identify data gaps and improve risk assessment of bisphenol A alternatives for human health.

Mhaouty-Kodja S, Zalko D, Tait S, Testai E, Viguié C, Corsini E, Grova N, Buratti FM, Cabaton NJ, Coppola L, De la Vieja A, Dusinska M, El Yamani N, Galbiati V, Iglesias-Hernández P, Kohl Y, Maddalon A, Marcon F, Naulé L, Rundén-Pran E, Salani F, Santori N, Torres-Ruiz M, Turner JD, Adamovsky O, Aiello-Holden K, Dirven H, Louro H, Silva MJ.Crit Rev Toxicol. 2024 Nov;54(10):696-753.

PUBMED DOI

Human cerebral organoids: Cellular composition and subcellular morphological features.

Mateos-Martínez, P., Coronel, R., Sachse, M., González-Sastre, R., Maeso, L., Rodriguez, M.J., Terron, M.C., López Alonso, V.*, Liste I. (2024). Human cerebral organoids: Cellular composition and subcellular morphological features. Front Cell Neurosci. Publicado (12.06.2024). IF = 5.3; Q1.

PKD phosphorylation and COP9/Signalosome modulate intracelular Spry2 protein stability

Martínez N, Gragera T, de Lucas MP, Cámara AB, Ballester A, Anta B, Fernández-Medarde A, López-Briones T, Ortega J, Peña-Jiénez D, Barbáchano A, Montero-Calle A, Cordero V, Barderas R, Iglesias T, Yunta M, Oliva JL, Muñoz A, Santos E, Zarich N and Rojas JM. PKD phosphorylation and COP9/Signalosome modulate intracelular Spry2 protein stability. Oncogenesis (2023) 12:20. DOI:10.1038/s41389-023-00465-3

DOI

Isolation and characterization of milk exosomes for use in advanced therapies

Medel-Martínez A, Redrado-Osta A, Crespo-Barreda A, Sancho-Albero M, Sánchez-Paniagua L, Sebastián V, Pardo M, De la Vieja A, and Martín-Duque P. Isolation and characterization of milk exosomes for use in advanced therapies. Biomolecules 2024

Micromotor-based electrochemical immunoassays for reliable determination of amyloid-β (1-42) in Alzheimer's diagnosed clinical samples

Gordón Pidal JM, Moreno-Guzmán M, Montero-Calle A, Valverde A, Pingarrón JM, Campuzano S, Calero M, Barderas R, López MÁ, Escarpa A. Micromotor-based electrochemical immunoassays for reliable determination of amyloid-β (1-42) in Alzheimer's diagnosed clinical samples. Biosens Bioelectron. 2024 249:115988. doi: 10.1016/j.bios.2023.115988.

DOI

Human cerebral organoids: Cellular composition and subcellular morphological features

Mateos-Martínez, P., Coronel, R., Sachse, M., González-Sastre, R., Maeso, L., Rodriguez, M.J., Terrón, M.C., López-Alonso, V., Liste, I. (2024). Human cerebral organoids: Cellular composition and subcellular morphological features. Front Cell Neurosci. 18. doi: 10.3389/fncel.2024.1406839.

DOI

Proteomics analysis of prefrontal cortex of Alzheimer’s disease patients revealed dysregulated proteins in the disease and novel proteins associated with amyloid-β pathology

Montero-Calle A, Coronel R, Garranzo-Asensio M, Solís-Fernández G, Rábano A, de los Ríos V, Fernández-Aceñero MJ, Mendes ML, Martínez-Useros J, Megías D, Moreno-Casbas MT, Peláez-García A, Liste I, Barderas R. Proteomics analysis of prefrontal cortex of Alzheimer’s disease patients revealed dysregulated proteins in the disease and novel proteins associated with amyloid-β pathology. Cell. Mol. Life Sci. 80, 141 (2023).

DOI

Bronchoalveolar cytokine profile differentiates Pulmonary Langerhans cell histiocytosis patients from other smoking-related interstitial lung diseases

Barril S, Acebo P, Millan-Billi P, Luque A, Sibila O, Tarín C, Tazi A, Castillo D, Hortelano S. Bronchoalveolar cytokine profile differentiates Pulmonary Langerhans cell histiocytosis patients from other smoking-related interstitial lung diseases. Respir Res. 2023 Dec 18;24(1):320. doi: 10.1186/s12931-023-02622-z.

DOI

Sprouty2 binds Grb2 at two different proline-rich regions, and the mechanism of ERK inhibition is independent of this interaction

Martínez N, García-Domínguez CA, Domingo B, Oliva JL, Zarich N, Sánchez A, Gutiérrez-Eisman S, Llopis J & Rojas JM. Sprouty2 binds Grb2 at two different proline-rich regions, and the mechanism of ERK inhibition is independent of this interaction. Cellular Signalling. 2007; 19: 2277-85. doi: 10.1016/j.cellsig.2007.07.008

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Use of 2D minilungs from human embryonic stem cells to study the interaction of Cryptococcus neoformans with the respiratory tract

Use of 2D minilungs from human embryonic stem cells to study the interaction of Cryptococcus neoformans with the respiratory tract. Rossi SA, García-Barbazán I, Chamorro-Herrero I, Taborda CP, Zaragoza Ó, Zambrano A. Microbes Infect. 2024 Mar-Apr;26(3):105260. doi: 10.1016/j.micinf.2023.105260. Epub 2023 Nov 18. PMID: 37981028.

PUBMED DOI

Olfactory Receptor OR2K2 Expression in Human Choroid Plexus as a Potential Marker in Early Sporadic Alzheimer's Disease

Alves VC, Figueiro-Silva J, Trullas R, Ferrer I, Carro E. Olfactory Receptor OR2K2 Expression in Human Choroid Plexus as a Potential Marker in Early Sporadic Alzheimer's Disease. Genes (Basel). 2024 Mar 21;15(3):385. doi: 10.3390/genes15030385.

DOI

NKG2C/KLRC2 tumor cell expression enhances immunotherapeutic efficacy against glioblastoma

de Dios O, Ramírez-González MA, Gómez-Soria I, Segura-Collar B, de Andrea CE, Fernández-Rubio L, Hernández-Laín A, Sepúlveda-Sánchez JM, Jiménez-Roldán L, García-Posadas G, Rodríguez-Ruiz ME, Pérez-Núñez A, Wainwright D.A., Gargini R*, Sánchez-Gómez P*. (2024) NKG2C/KLRC2 tumor cell expression enhances immunotherapeutic efficacy against glioblastoma. J. Immunother. Cancer (in press). (IF: 10.3) (D1) (Immunology / Oncology)1. de Dios O, Ramírez-González MA, Gómez-Soria I, Segura-Collar B, de Andrea CE, Fernández-Rubio L, Hernández-Laín A, Sepúlveda-Sánchez JM, Jiménez-Roldán L, García-Posadas G, Rodríguez-Ruiz ME, Pérez-Núñez A, Wainwright D.A., Gargini R*, Sánchez-Gómez P*. (2024). J. Immunother. Cancer (in press). (IF: 10.3) (D1) (Immunology / Oncology)

Structural variation analysis of 6,500 whole genome sequences in amyotrophic lateral sclerosis

Structural variation analysis of 6,500 whole genome sequences in amyotrophic lateral sclerosis. Al Khleifat A, Iacoangeli A, van Vugt JJFA, Bowles H, Moisse M, Zwamborn RAJ, van der Spek RAA, Shatunov A, Cooper-Knock J, Topp S, Byrne R, Gellera C, López V, Jones AR, Opie-Martin S, Vural A, Campos Y, van Rheenen W, Kenna B, Van Eijk KR, Kenna K, Weber M, Smith B, Fogh I, Silani V, Morrison KE, Dobson R, van Es MA, McLaughlin RL, Vourc'h P, Chio A, Corcia P, de Carvalho M, Gotkine M, Panades MP, Mora JS, Shaw PJ, Landers JE, Glass JD, Shaw CE, Basak N, Hardiman O, Robberecht W, Van Damme P, van den Berg LH, Veldink JH, Al-Chalabi A. NPJ Genom Med. 2022;7(1):8. DOI: 10.1038/s41525-021-00267-9

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Hedgehog signalling modulates immune response and protecs againts Experimental Autoimmune Encephalomyelitis

Ballester A, Guijarro A, Bravo B, Hernández J, Murillas R, Gallego MI and Ballester S. 2022. Hedgehog signalling modulates immune response and protecs againts Experimental Autoimmune Encephalomyelitis. International Journal of Molecular Sciences (2022) 23, 3171. DOI: 10.3390/ijms23063171

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Effects of nanomolar methylmercury on developing human neural stem cells and zebrafish embryo

Torres-Ruiz, M.; de Alba-Gonzalez, M.; Cañas-Portilla, A.I.; Coronel, R.; Liste, I.; González-Caballero, M.C. (2024). Effects of nanomolar methylmercury on developing human neural stem cells and zebrafish embryo. Food Chem Toxicol. 188, 114684. doi: 10.1016/j.fct.2024.114684

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In Vivo Ultrafast Doppler Imaging Combined with Confocal Microscopy and Behavioral Approaches to Gain Insight into the Central Expression of Peripheral Neuropathy in Trembler-J Mice

Martínez Barreiro M, Vázquez Alberdi L, De León L, Avellanal G, Duarte A, Anzibar Fialho M, Baranger J, Calero M, Rubido N, Tanter M, Negreira C, Brum J, Damián JP, Kun A. In Vivo Ultrafast Doppler Imaging Combined with Confocal Microscopy and Behavioral Approaches to Gain Insight into the Central Expression of Peripheral Neuropathy in Trembler-J Mice. Biology (Basel). 2023 12(10):1324. doi: 10.3390/biology12101324.

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Background levels and brain organoid impact of RF field exposure in a healthcare environment

Hernández, J.A.; Rosca, A.; Suárez, S.; Coronel, R.; Suarez, O.J.; Peran-Ramos, P.; Marina, P.; Rabassa, L.E.; Mateos, P.; Liste, I.; López-Alonso, V.; Torres-Ruiz, M.; Febles, V.M.; Ramos V. (2024). Background levels and brain organoid impact of RF field exposure in a healthcare environment. Front Antennas Propag. 2, 1357649. IF = In progress (New Journal).

Aryl-hydrocarbon receptor-interacting protein regulates tumorigenic and metastatic properties of colorectal cancer cells driving liver metastasis

Solís-Fernández G, Montero-Calle A, Sánchez-Martínez M, Pelaez-Garcia A, Fernandez-Aceñero MJ, Pallares P, Mendiola M, Hendrix J, Hardissom D, Bartolome RA, Hofkens J, Rocha S, Barderas R. Aryl-hydrocarbon receptor-interacting protein regulates tumorigenic and metastatic properties of colorectal cancer cells driving liver metastasis. Br J Cancer 126, 1604–1615 (2022)

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Visualization of Lipid Droplets in the Alveolar Macrophage Cell Line MH-S with Live-cell Imaging by 3D Holotomographic Microscopy (Nanolive)

Pérez-Montero A, Zaragoza O, Luque A, Hortelano S, Acebo P. Visualization of Lipid Droplets in the Alveolar Macrophage Cell Line MH-S with Live-cell Imaging by 3D Holotomographic Microscopy (Nanolive). Bio Protoc. 2023 Mar 5;13(5):e4629. doi: 10.21769/BioProtoc.4629.

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Endothelial nitric oxide synthase regulates N-Ras activation on the Golgi complex of antigen-stimulated T cells

Ibiza S, Pérez-Rodríguez A, Ortega A, Martínez-Ruiz A, Barreiro O, García-Domínguez CA, Víctor VM, Esplugues JV, Rojas JM, Sánchez-Madrid F & Serrador JM. Endothelial nitric oxide synthase regulates N-Ras activation on the Golgi complex of antigen-stimulated T cells. Proceedings of the National Academy of Sciences USA. 2008; 105: 10507- 12. doi:10.1073/pnas.0711062105

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Modeling of Respiratory Diseases Evolving with Fibrosis from Organoids Derived from Human Pluripotent Stem Cells

Modeling of Respiratory Diseases Evolving with Fibrosis from Organoids Derived from Human Pluripotent Stem Cells. Chamorro-Herrero I, Zambrano A. Int J Mol Sci. 2023 Feb 23;24(5):4413. doi: 10.3390/ijms24054413. PMID: 36901843; PMCID: PMC10002124.

PUBMED DOI

Circadian rhythm disruption and retinal dysfunction: a bidirectional link in Alzheimer's disease?

Carrero L, Antequera D, Municio C, Carro E. Circadian rhythm disruption and retinal dysfunction: a bidirectional link in Alzheimer's disease? Neural Regen Res. 2024 Sep 1;19(9):1967-1972. doi: 10.4103/1673-5374.390962.

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Promising anticancer prodrugs based on Pt(IV) complexes with bis-organosilane ligands in axial positions

Navas F, Chocarro-Calvo A, Iglesias-Hernández P, Fernández-García P, Morales V, García-Martínez JM, Sanz R, De la Vieja A*, García Jiménez C* and García Muñoz R*. Promising anticancer prodrugs based on Pt(IV) complexes with bis-organosilane ligands in axial positions. Journal of Medicinal Chemistry. 2024. DOI: 10.1021/acs.jmedchem.3c02393. PMID: 38592014

PUBMED DOI

Age-stratified comorbid and pharmacologic analysis of patients with glioblastoma

Rabin EE, Huang J, Kim M, Mozny A, Lauing KL, Penco-Campillo M, Zhai L, Bommi P, Mi X, Power EA, Prabhu VC, Anderson DE, Barton KP, Walunas TL, Schiltz GE, Amidei C, Sanchez-Gomez P, Thakkar JP, Lukas RV, Wainwright DA. (2024) Age-stratified comorbid and pharmacologic analysis of patients with glioblastoma. Brain Behav. Immun. Health Mar 15:38:100753. PMID: 38600951 doi: 10.1016/j.bbih.2024.100753

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Telomere length analysis in amyotrophic lateral sclerosis using large-scale whole genome sequence data

Telomere length analysis in amyotrophic lateral sclerosis using large-scale whole genome sequence data. Al Khleifat A, Iacoangeli A, Jones AR, van Vugt JJFA, Moisse M, Shatunov A, Zwamborn RAJ, van der Spek RAA, Cooper-Knock J, Topp S, van Rheenen W, Kenna B, Van Eijk KR, Kenna K, Byrne R, López V, Opie-Martin S, Vural A, Campos Y, Weber M, Smith B, Fogh I, Silani V, Morrison KE, Dobson R, van Es MA, McLaughlin RL, Vourc'h P, Chio A, Corcia P, de Carvalho M, Gotkine M, Panades MP, Mora JS, Shaw PJ, Landers JE, Glass JD, Shaw CE, Basak N, Hardiman O, Robberecht W, Van Damme P, van den Berg LH, Veldink JH, Al-Chalabi A. Front Cell Neurosci. 2022; 16:1050596.

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Efficient generation of human cerebral organoids directly from adherent cultures of pluripotent stem cels. Journal of Tissue Engineering.

Rosa González; Raquel Coronel; Adela Bernabeu; Patricia Mateos; Andreea Rosca; Victoria López*; Isabel Liste. 2024. Efficient generation of human cerebral organoids directly from adherent cultures of pluripotent stem cels. Journal of Tissue Engineering. SAGE. 15, pp.1-14. D1

The CSN3 subunit of the COP9 signalosome interacts with the HD region of Sos1 regulating stability of this GEF protein

Zarich N, Anta B, Fernández-Medarde A, Ballester A, de Lucas MP, Cámara AB, Anta B, Oliva JL, Rojas-Cabañeros JM and Santos E. The CSN3 subunit of the COP9 signalosome interacts with the HD region of Sos1 regulating stability of this GEF protein. Oncogenesis (2019) 8:2. DOI: 10.1038/s41389-018-0111-1

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Neurotoxicity and endocrine disruption caused by polystyrene nanoparticles in zebrafish embryo

Torres-Ruiz M, de Alba-Gonzalez M, Morales M, Martin-Folgar R, Gonzalez MC, Cañas-Portilla AI* and De la Vieja A*. Neurotoxicity and endocrine disruption caused by polystyrene nanoparticles in zebrafish embryo. Science of the Total Environment 2023 874:162406. doi: 10.1016/j.scitotenv.2023.162406. PMID: 36841402.

PUBMED DOI

Non-invasive biomarkers for mild cognitive impairment and Alzheimer's disease. Neurobiol Dis

Botello-Marabotto M, Martínez-Bisbal MC, Calero M, Bernardos A, Pastor AB, Medina M, Martínez-Máñez R. Non-invasive biomarkers for mild cognitive impairment and Alzheimer's disease. Neurobiol Dis. 2023 doi: 10.1016/j.nbd.2023.106312.

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Seroreactivity Against Tyrosine Phosphatase PTPRN Links Type 2 Diabetes and Colorectal Cancer and Identifies a Potential Diagnostic and Therapeutic Target

Garranzo-Asensio M, Solís-Fernández G, Montero-Calle A, García-Martínez JM, Fiuza MC, Pallares P, Palacios-Garcia N, García-Jiménez C, Guzman-Aranguez A, Barderas R. Seroreactivity Against Tyrosine Phosphatase PTPRN Links Type 2 Diabetes and Colorectal Cancer and Identifies a Potential Diagnostic and Therapeutic Target. Diabetes 2022;71(3):497–510

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Bronchoalveolar lavage cytokine profile in patients with Pulmonary Langerhans Cell Histiocytosis differs from other interstitial lung diseases Eur

Castillo Villegas D; Barril Farre S; Millan Billi P; Sibila Vidal O; Luque A; Acebo P; Hortelano S. 2020. Bronchoalveolar lavage cytokine profile in patients with Pulmonary Langerhans Cell Histiocytosis differs from other interstitial lung diseases Eur. Respir. J. 2020; 56: Suppl. 64, 5253. https://doi.org/10.1183/13993003.congress-2020.5253

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Epigenetic Inactivation of the ERK inhibitor Spry2 in B-Cell Diffuse Lymphomas

Sánchez A, Setién F, Martínez N, Oliva JL, Herranz M, Fraga MF, Alaminos M, Esteller M & Rojas JM. Epigenetic Inactivation of the ERK inhibitor Spry2 in B-Cell Diffuse Lymphomas. Oncogene. 2008; 27: 4969- 72. doi:10.1038/onc.2008.129

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Effects of Hypocalcemic Vitamin D Analogs in the Expression of DNA Damage Induced in Minilungs from hESCs: Implications for Lung Fibrosis

Effects of Hypocalcemic Vitamin D Analogs in the Expression of DNA Damage Induced in Minilungs from hESCs: Implications for Lung Fibrosis. Magro-Lopez E, Chamorro-Herrero I, Zambrano A. Int J Mol Sci. 2022 Apr 28;23(9):4921. doi: 10.3390/ijms23094921. PMID: 35563311; PMCID: PMC9104735.

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Background levels and brain organoid impact of RF field exposure in a healthcare environment

Hernández, J.A.; Rosca, A.; Suárez, S.; Coronel, R.; Suarez, O.J.; Peran-Ramos, P.; Marina, P.; Rabassa, L.E.; Mateos, P.; Liste, I.; López-Alonso, V.; Torres-Ruiz, M.; Febles, V.M.; Ramos V. (2024). Background levels and brain organoid impact of RF field exposure in a healthcare environment. Front Antennas Propag. 2, 1357649. doi: 10.3389/fanpr.2024.1357649.

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EGFR amplification and EGFRvIII predict and participate in TAT-Cx43266-283 antitumor response in preclinical glioblastoma models

Álvarez-Vázquez A, San-Segundo L, Cerveró-García P, Flores-Hernández R, Ollauri-Ibáñez C, Segura-Collar B, Hubert CG, Morrison G, Pollard SM, Lathia JD, Sánchez-Gómez P, Tabernero A. (2024) EGFR amplification and EGFRvIII predict and participate in TAT-Cx43266-283 antitumor response in preclinical glioblastoma models. Neuro Oncol. Mar 20:noae060. PMID: 38507464doi: 10.1093/neuonc/noae060

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Association of NIPA1 repeat expansions with amyotrophic lateral sclerosis in a large international cohort

Association of NIPA1 repeat expansions with amyotrophic lateral sclerosis in a large international cohort. Gijs HP Tazelaar, Annelot M Dekker, Joke JFA van Vugt, Rick AA van der Spek, Henk-Jan Westeneng, Lindy Kool, et al. on behalf of the Project MinE ALS Sequencing Consortium. Neurobiology of aging. 2019;74:9-15. DOI: 10.1016/j.neurobiolaging.2018.09.012

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Editorial: IL-2/IL-2R axis modulation by mesenchymal stromal cells: interaction with immunosuppressive drugs?

Ballester S and Ballester A. Editorial: IL-2/IL-2R axis modulation by mesenchymal stromal cells: interaction with immunosuppressive drugs? Journal of Leukocyte Biology (2017) 101-3, pp.617-619. ISSN 1938-3673, (editorial by invitation) doi:10.1189/jlb.5CE0916-393R

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Efficient generation of human cerebral organoids directly from adherent cultures of pluripotent stem cells

González-Sastre, R.; Coronel, R.; Bernabeu-Zornoza, A.; Mateos-Martínez, P.; Rosca, A.; López-Alonso, V.; Liste, I. (2024). Efficient generation of human cerebral organoids directly from adherent cultures of pluripotent stem cells. J Tissue Eng. 15, 20417314231226027. doi: 10.1177/20417314231226027

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New approach methods to improve human health risk assessment of thyroid hormone system disruption – a PARC project

Ramhøj L, Axelstad M, Baert Y, Cañas-Portilla AI, Chalmel F, Marchandise L, De La Vieja A, Evrard B, Haigis AC, Hamers T, Holbech H, Iglesias-Hernandez P, Knapen D, Morthorst JE, Nikolov NG, Nissen ACV, Oelgeschlaeger M, Renko K, Rogiers V, Schüürmann G, Stinckens E, Houmark M, Torres-Ruiz M, van Duursen M, Vanhaecke T, Vergauwen L, Wedebye EB, Svingen T*. New approach methods to improve human health risk assessment of thyroid hormone system disruption – a PARC project. Frontiers in Toxicology. 2023, 5:1189303. doi: 10.3389/ftox.2023.1189303. PMID: 37265663

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TNAP and P2X7R: New Plasma Biomarkers for Alzheimer's Disease

Aivar P, Bianchi C, Di Lauro C, Soria-Tobar L, Alvarez-Castelao B, Calero M, Medina M, Diaz-Hernandez M. TNAP and P2X7R: New Plasma Biomarkers for Alzheimer's Disease. Int J Mol Sci. 2023 24(13):10897. doi: 10.3390/ijms241310897.

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Effects of 700 and 3500 MHz 5G radiofrequency exposure on developing zebrafish embryos

Torres-Ruiz M, Suárez OJ, López V, Marina P, Sanchis A, Liste I, de Alba M, Ramos V. Effects of 700 and 3500 MHz 5G radiofrequency exposure on developing zebrafish embryos. Sci Total Environ. 2024 Jan 8:169475. D1.

Towards Control and Oversight of SARS-CoV-2 Diagnosis and Monitoring through Multiplexed Quantitative Electroanalytical Immune Response Biosensors

Torrente-Rodríguez RM, Montero-Calle A, San Bartolomé C, Cano O, Vázquez M, Iglesias-Caballero M, Corral-Lugo A, McConnell MJ, Pascal M, Mas V, Pingarrón JM, Barderas R, Campuzano S. Towards Control and Oversight of SARS-CoV-2 Diagnosis and Monitoring through Multiplexed Quantitative Electroanalytical Immune Response Biosensors. Angewandte Chemie 2022; 61:e202203662

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alpha-hispanolol induces apoptosis and suppresses migration and invasion of glioblastoma cells likely via downregulation of MMP-2/9 expression

Sánchez-Martín V; Jiménez-García L; Herranz S; Luque A; Acebo P; de las Heras B; Hortelano S. 2019. alpha-hispanolol induces apoptosis and suppresses migration and invasion of glioblastoma cells likely via downregulation of MMP-2/9 expression. Front Pharmacol. 2019 Sep 3;10:935. https://doi.org/10.3389/fphar.2019.00935.

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Cell density-dependent inhibition of epidermal growth factor receptor signaling by p38alpha mitogen- activated protein kinase via Sprouty2 downregulation

Swat A, Dolado I, Rojas JM & Nebreda AR. Cell density-dependent inhibition of epidermal growth factor receptor signaling by p38alpha mitogen- activated protein kinase via Sprouty2 downregulation. Molecular and Cellular Biology. 2009; 29: 3332-43. doi:10.1128/MCB.01955-08

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Minilungs from Human Embryonic Stem Cells to Study the Interaction of Streptococcus pneumoniae with the Respiratory Tract

Minilungs from Human Embryonic Stem Cells to Study the Interaction of Streptococcus pneumoniae with the Respiratory Tract. Sempere J, Rossi SA, Chamorro-Herrero I, González-Camacho F, de Lucas MP, Rojas-Cabañeros JM, Taborda CP, Zaragoza Ó, Yuste J, Zambrano A. Microbiol Spectr. 2022 Jun 29;10(3):e0045322. doi: 10.1128/spectrum.00453-22. Epub 2022 Jun 13. PMID: 35695525; PMCID: PMC9241785.

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Contenidos con Investigacion Biología Computacional .

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La Unidad de Biología Computacional de la UFIEC tiene como línea de investigación principal la aplicación de métodos computacionales para la interpretación funcional de los datos obtenidos por las tecnologías de alto rendimiento, y la posibilidad de integración de esta información con los datos clínicos para aplicaciones diagnósticas y terapéuticas de enfermedades crónicas.

 

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Contenidos con Investigacion Biología Computacional .