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Investigación

Biología Computacional

Líneas de investigación

Contenidos con Investigacion Biología Computacional .

Biología Computacional

  • Uso de la Biología Computacional para investigación de mecanismos moleculares alterados en enfermedades crónicas (neurodegeneración y cancer) que puedan contribuir a prevenir, diagnosticar precozmente, y tratar la enfermedad de manera individualizada. 
  • Búsqueda e interpretación de vías de señalización, variantes génicas y genes biomarcadores obtenidos por técnicas de secuenciación profunda y técnicas de genotipado masivo.

Proyectos de investigación

Contenidos con Investigacion Biología Computacional .

  • 2022-2025: Modelos humanos neurales para estudiar la evolución celular y proteómica en la enfermedad de Alzheimer. PI22/00055. Proyecto de Acción Estratégica en Salud Intramural. PI I Liste, CoIP V. López-Alonso.
  • 2022-2024: CAM Ayudas para la contratación de técnico de Garantia Juvenil
  • 2022-2025: Medicina Personalizada (MedPer) en la detección precoz del deterioro cognitivo (DC) preclínico. Desarrollo de un modelo predictivo de riesgo. PMP22/00084. Proyectos de Investigación de Medicina Personalizada de Precisión de la Acción Estratégica en Salud. IP. A. Almeida Parra.
  • 2022-2025: Implicaciones de la proteína precursora amiloide (APP): neurodesarrollo y enfermedad de Alzheimer. PID2021-126715OB-I00. Programa Estatal de I+D+i Orientada a los Retos de la Sociedad. Ministerio de Ciencia e Innovación. PI I. Liste
  • From 2017-2022. Project MinE International groundbreaking genetic ALS research (www.projectmine.com).
  • 2020 – 2022: ELA-BASE: Una cohorte para un estudio piloto longitudinal de Medicina de Precisión en Esclerosis Lateral Amiotrófica (ELA). UFIECPY 354/19-TS.Actividad Singular dentro del Programa de prestación de servicios científico-técnicos en los centros del ISCIII. Programa Intramural 2019 ISCIII. PI Y. Campos.
  • 2020–2021: Spanish Ministry of Economy and Competitiveness: Ayudas para la contratación de estudiantes, Garantia Juvenil. V. López-Alonso
  • 01/04/2015 - 01/04/2021: New therapeutic strategies for resistant colorectal cancer. Fundación Científica de la Asociación Española Contra el Cáncer. CGB14142035THOM.  PI JM Rojas. 
  • 2017-2020: MicroRNAs y marcadores de metabolismo lipídico como potencial enlace entre la disfunción vascular y la patofisiología de la enfermedad de Alzheimer. SAF2016-78603-R MINECO. PI M Medina.
  • 2017-2020: Papel fisiológico de la proteína Shoc2/Sur8 y estudio de su implicación en patologías humanas. SAF2016-78852-R MINECO. PI JM Rojas.
  • 2019: Proyecto MinE: del análisis biocomputacional de genomas de pacientes con Esclerosis Lateral Amiotrófica al desarrollo de un modelo de motoneurona diferenciada a partir de células madre pluripotenciales inducidas obtenidas de cultivos de fibroblastos humanos de origen dérmico. GGVP 345/18 FUNDELA. IP Y Campos.
  • 2011-2013. IMBIOMEDvision: Promoting and Monitoring Biomedical Informatics in Europa Grant agreement no: 270107 Comisión Europea. IP V López-Alonso
  • 2011-2012. COMBIOMED. Red Temática de Investigación Cooperativa en Biomedicina Computacional RD07/0067/00 Fondo de Investigación Sanitaria. Instituto de Salud Carlos III. IP y Coordinación V. López-Alonso
     
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Saliva is a Good Candidate to be the New Gold-Standard Sample for Neurodegenerative Diseases

Orive G, Lopera F, Carro E. Saliva is a Good Candidate to be the New Gold-Standard Sample for Neurodegenerative Diseases. J Alzheimers Dis. 2022;87(4):1497-1501. doi: 10.3233/JAD-220144.

DOI

Choroid Plexus Aquaporins in CSF Homeostasis and the Glymphatic System: Their Relevance for Alzheimer's Disease

Municio C, Carrero L, Antequera D, Carro E. Choroid Plexus Aquaporins in CSF Homeostasis and the Glymphatic System: Their Relevance for Alzheimer's Disease. Int J Mol Sci. 2023 Jan 3;24(1):878. doi: 10.3390/ijms24010878.

DOI

On optimal temozolomide scheduling for slowly growing glioblastomas

Segura-Collar B, Jiménez-Sánchez J, Gargini R, Dragoj M, Sepúlveda-Sánchez JM, Pesic M, Ramírez MA, Ayala-Hernández LE, Sánchez-Gómez P*, Pérez-García VM*. (* Co-corresponding author) (2022) On optimal temozolomide scheduling for slowly growing glioblastomas. Neuro-Oncol. Adv. Sep 27;4(1): vdac155. PMID: 36325374 doi: 10.1093/noajnl/vdac155

DOI

The Project MinE databrowser: bringing large-scale whole-genome sequencing in ALS to researchers and the public

The Project MinE databrowser: bringing large-scale whole-genome sequencing in ALS to researchers and the public. van der Spek RAA, van Rheenen W, Pulit SL, Kenna KP, van den Berg LH, Veldink JH; Project MinE ALS Sequencing Consortium. Amyotroph Lateral Scler Frontotemporal Degener. 2019 ;20:432-440.

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Restrained Th17 response and myeloid cell infiltration into the central nervous system by human decidua-derived mesenchymal stem cells during experimental autoimmune encephalomyelitis

Bravo B, Gallego MI, Flores AI; Bornstein R, Puente-Bedia A, Hernández J, de la Torre P, García-Zaragoza E, Pérez-Tavarez R, Grande J, Ballester A and Ballester S. Restrained Th17 response and myeloid cell infiltration into the central nervous system by human decidua-derived mesenchymal stem cells during experimental autoimmune encephalomyelitis. Stem Cell Research & Therapy (2016) 7, PMCID: PMC4797118 doi:10.1186/s13287-016-0304-5

PUBMED DOI

Internalization and toxicity of polystyrene nanoplastics on inmortalized human neural stem cells

González-Caballero, M.C.; de Alba-González, M.; Torres-Ruiz, M.; Iglesias-Hernández, P.; Zapata, V.; Terrón, M.C.; Sachse, M.; Morales, M.; Martin-Folgar, R.; Liste, I.; Cañas-Portilla, A.I. (2024). Internalization and toxicity of polystyrene nanoplastics on inmortalized human neural stem cells. Chemosphere. 355, 141815. doi: 10.1016/j.chemosphere.2024.141815.

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Vitamin D induces SIRT1 activation through K610 deacetylation in colon cancer

García-Martínez JM, Chocarro-Calvo A, Gutiérrez-Salmerón M, Martinez-Useros J, Fernandez-Aceñedo MJ, Fiuza MC, Cáceres-Rentero J, De la Vieja A, Barbáchano A, Muñoz A, Larriba MJ, and García-Jiménez C*. Vitamin D induces SIRT1 activation through K610 deacetylation in colon cancer. eLife 2023. 12:RP86913. doi: 10.7554/eLife.86913. PMID: 37530744

PUBMED DOI

Hepatitis E Virus Seroprevalence is Associated with Neurodegenerative Disorders in Older People with Dementia: A Case-Control Study

Pérez-García F, Vázquez-Morón S, Burgueño-García I, Muñoz-Gómez MJ, Zea-Sevilla MA, Calero M, Martínez I, Rábano A, Resino S. Hepatitis E Virus Seroprevalence is Associated with Neurodegenerative Disorders in Older People with Dementia: A Case-Control Study. J Infect Dis. 2023 227(7):873-877. doi: 10.1093/infdis/jiac268.

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Low Levels of Amyloid Precursor Protein (APP) Promote Neurogenesis and Decrease Gliogenesis in Human Neural Stem Cells

Coronel R, Lopez-Alonso V, Gallego, M., Liste I. Low Levels of Amyloid Precursor Protein (APP) Promote Neurogenesis and Decrease Gliogenesis in Human Neural Stem Cells. Int J Mol Sci. 2023: 24(19):14635. Q1.

Multiplexed Biosensing Diagnostic Platforms Detecting Autoantibodies to Tumor-Associated Antigens from Exosomes Released by CRC Cells and Tissue Samples Showed High Diagnostic Ability for Colorectal Cancer

Ana Montero-Calle, Itziar Aranguren-Abeigon, María Garranzo-Asensio, Carmen Poves, María Jesús Fernández-Aceñero, Javier Martínez-Useros, Rodrigo Sanz, Jana Dziaková, Javier Rodriguez-Cobos, Guillermo Solís-Fernández, Eloy Povedano, Maria Gamella, Rebeca Magnolia Torrente-Rodríguez, Miren Alonso-Navarro, Vivian de los Ríos, J. Ignacio Casal, Gemma Domínguez, Ana Guzman-Aranguez, Alberto Peláez-García, José Manuel Pingarrón, Susana Campuzano, Rodrigo Barderas. Multiplexed Biosensing Diagnostic Platforms Detecting Autoantibodies to Tumor-Associated Antigens from Exosomes Released by CRC Cells and Tissue Samples Showed High Diagnostic Ability for Colorectal Cancer. Engineering 2021; 7:1393.

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A hispanolone-derived diterpenoid inhibits M2-Macrophage polarization in vitro via JAK/STAT and attenuates chitin induced inflammation in vivo

Jiménez-García L; Higueras MA; Herranz S; Hernández-López M; Luque A; de las Heras B; Hortelano S. 2018. A hispanolone-derived diterpenoid inhibits M2-Macrophage polarization in vitro via JAK/STAT and attenuates chitin induced inflammation in vivo. Biochem Pharmacol. 2018 Aug;154:373-383. https://doi.org/10.1016/j.bcp.2018.06.002.

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SPROUTY-2 and E-cadherin regulate reciprocally and dictate colon cancer cell tumourigenicity

Barbáchano A, Ordóñez-Morán P, García JM, Sánchez A, Pereira F, Larriba MJ, Martínez N, Hernández J, Landolfi S, Bonilla F, Pálmer HG, Rojas JM & Muñoz A. SPROUTY-2 and E-cadherin regulate reciprocally and dictate colon cancer cell tumourigenicity. Oncogene. 2010; 29:4800-13. doi:10.1038/onc.2010.225

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Identification of AAV serotypes for lung gene therapy in human embryonic stem cell-derived lung organoids

Identification of AAV serotypes for lung gene therapy in human embryonic stem cell-derived lung organoids. Meyer-Berg H, Zhou Yang L, Pilar de Lucas M, Zambrano A, Hyde SC, Gill DR. Stem Cell Res Ther. 2020 Oct 23;11(1):448. doi: 10.1186/s13287-020-01950-x. PMID: 33097094; PMCID: PMC7582027.

PUBMED DOI

Implication of salivary lactoferrin and periodontal-mediated infections in Alzheimer's disease

Municio C, Carro E. Implication of salivary lactoferrin and periodontal-mediated infections in Alzheimer's disease. Neural Regen Res. 2023 Dec;18(12):2691-2692. doi: 10.4103/1673-5374.373712.

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IDP-410: a Novel Therapeutic Peptide that Alters N-MYC Stability and Reduces Angiogenesis and Tumor Progression in Glioblastomas

Gargini R, Segura-Collar B, Garranzo-Asensio M, Hortigüela R, Iglesias-Hernández P, Lobato-Alonso D, Moreno-Raja M, Esteban-Martin S, Sepúlveda-Sánchez JM, Nevola L, Sánchez-Gómez P. (2022) IDP-410: a Novel Therapeutic Peptide that Alters N-MYC Stability and Reduces Angiogenesis and Tumor Progression in Glioblastomas. Neurotherapeutics. Jan;19(1):408-420. PMID: 35099769 doi: 10.1007/s13311-021-01176-6

DOI

European mitochondrial haplogroups are associated with CD4+ T cell recovery in HIV-infected patients on combination antiretroviral therapy

European mitochondrial haplogroups are associated with CD4+ T cell recovery in HIV-infected patients on combination antiretroviral therapy. María Guzmán Fulgencio; Juan Berenguer; Dariela Micheloud; Amanda Fernández Rodríguez; Mónica García Álvarez; María Angeles Jiménez Sousa; José María Bellón; Yolanda Campos; Jaime Cosín; Teresa Aldámiz Echevarría; Pilar Catalán; Juan Carlos López; Salvador Resino. The Journal of antimicrobial chemotherapy. 2013; 68: 2349 - 2406. DOI: 10.1093/jac/dkt206

DOI

Comparative assessment of PDE 4 and 7 inhibitors as therapeutic agents in experimental autoimmune encephalomyelitis

González-García C, Bravo B, Ballester A, Gómez-Pérez R, Eguiluz C, Redondo M, Martínez A, Gil C and Ballester S. Comparative assessment of PDE 4 and 7 inhibitors as therapeutic agents in experimental autoimmune encephalomyelitis British Journal of Pharmacology (2013) 170-3, pp.602-613. PMCID: PMC3791998 doi:10.1111/bph.12308

PUBMED DOI

Molecular effects of polystyrene nanoplastics on human neural stem cells

Martin-Folgar, R.; González-Caballero, M.C.; Torres-Ruiz, M.; Cañas-Portilla, A.I.; de Alba-González, M.; Liste, I.; Morales, M. (2024). Molecular effects of polystyrene nanoplastics on human neural stem cells. PLoS One. 19, e0295816. doi: 10.1371/journal.pone.0295816.

DOI

Validation of dynamic risk stratification and impact of BRAF in risk assessment of thyroid cancer, a nation-wide multicenter study

Perez-Fernandez L, Sastre-Marcos J, Zafón C, Oleaga A, Castelblanco E, Capel I, Galofré JC, Guadalix S, De la Vieja A, and Riesco-Eizaguirre G*. Validation of dynamic risk stratification and impact of BRAF in risk assessment of thyroid cancer, a nation-wide multicenter study. Frontiers in Endocrinology 2023. 13:1071775. doi: 10.3389/fendo.2022.1071775. PMID: 36714606.

PUBMED DOI

Identification of Clusterin as a Major ABri- and ADan-Binding Protein Using Affinity Chromatography

Rostagno A, Calero M, Ghiso J. Identification of Clusterin as a Major ABri- and ADan-Binding Protein Using Affinity Chromatography. Methods Mol Biol. 2022 2466:49-60. doi: 10.1007/978-1-0716-2176-9_4.

DOI

Liste I Amyloid Precursor Protein (APP) Regulates Gliogenesis and Neurogenesis of Human Neural Stem Cells by Several Signaling Pathways

Coronel R, Bernabeu-Zornoza A, Palmer C, González R, Mateos P, Rosca A., Lopez-Alonso V, Liste I Amyloid Precursor Protein (APP) Regulates Gliogenesis and Neurogenesis of Human Neural Stem Cells by Several Signaling Pathways, Int J Mol Sci. 2023: 24(16):12964. Q1.

In-depth proteomics characterization of ∆Np73 effectors identifies key proteins with diagnostic potential implicated in lymphangiogenesis, vasculogenesis and metastasis in colorectal cancer

Garranzo-Asensio M, Rodríguez-Cobos J, San Millán C, Poves C, Fernández-Aceñero MJ, Pastor-Morate D, Viñal D, Montero-Calle A, Solís-Fernández G, Ceron MA, Gámez-Chiachio M, Rodríguez N, Guzmán-Aránguez A, Barderas R, Domínguez G. In-depth proteomics characterization of ∆Np73 effectors identifies key proteins with diagnostic potential implicated in lymphangiogenesis, vasculogenesis and metastasis in colorectal cancer. Molecular Oncology 2022; 16: 2672.

DOI

Screening Assays to Characterize Novel Endothelial Regulators Involved in the Inflammatory Response

MA Higueras; L Jiménez-García; S Herranz; S Hortelano; A Luque. 2017. Screening Assays to Characterize Novel Endothelial Regulators Involved in the Inflammatory Response. J Vis Exp. 2017 Sep 15;(127). https://doi.org/10.3791/55824.

DOI

The C-terminus of H-Ras as a target for the covalent binding of reactive compounds modulating Rasdependent pathways

Oeste CL, Díez-Dacal B, Bray F, García de Lacoba M, de la Torre BG, Andreu D, Ruiz-Sánchez AJ, Pérez-Inestrosa E, García-Domínguez CA, Rojas, JM & Pérez-Sala D. The C-terminus of H-Ras as a target for the covalent binding of reactive compounds modulating Rasdependent pathways. PloS ONE. 2011; 6(1): e15866. doi:10.1371/journal.pone.0015866

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Physiological and pathological effects of amyloid-β species in neural stem cell biology

Physiological and pathological effects of amyloid-β species in neural stem cell biology. Bernabeu-Zornoza A, Coronel R, Palmer C, Monteagudo M, Zambrano A, Liste I. Neural Regen Res. 2019 Dec;14(12):2035-2042. doi: 10.4103/1673-5374.262571. PMID: 31397330; PMCID: PMC6788229.

PUBMED DOI

Lactoferrin as Immune-Enhancement Strategy for SARS-CoV-2 Infection in Alzheimer's Disease Patients

Bartolomé F, Rosa L, Valenti P, Lopera F, Hernández-Gallego J, Cantero JL, Orive G, Carro E. Lactoferrin as Immune-Enhancement Strategy for SARS-CoV-2 Infection in Alzheimer's Disease Patients. Front Immunol. 2022 Apr 25;13:878201. doi: 10.3389/fimmu.2022.878201

DOI

Netrin-1 in Glioblastoma Neovascularization: The New Partner in Crime?

Vásquez X, Sánchez-Gómez P*, Palma V*. (* Co-corresponding author) (2021) Netrin-1 in Glioblastoma Neovascularization: The New Partner in Crime? Int J Mol Sci. 2021 Jul 31;22(15):8248. PMID: 34361013 doi: 10.3390/ijms22158248.

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Mitochondrial haplogroups are associated with clinical pattern of AIDS progression in HIV-infected patients. Journal of acquired immune deficiency syndromes• Mitochondrial haplogroups are associated with clinical pattern of AIDS progression in HIV-infected patients. Journal of acquired immune deficiency syndromes

Mitochondrial haplogroups are associated with clinical pattern of AIDS progression in HIV-infected patients. Journal of acquired immune deficiency syndromes. María Guzmán Fulgencio; José Luis Jiménez; Mónica García Álvarez; José María Bellón; Amanda Fernández Rodriguez; Yolanda Campos; Carmen Rodríguez; Juan González Garcia; Melchor Riera; Pompeyo Viciana; Ma Ángeles Muñoz Fernández; Salvador Resino. J Acquir Immune Defic Syndr. 2013 ;63:178-83. DOI: 10.1097/QAI.0b013e3182893f74

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Combined use of pharmacophoric models together with drug metabolism and genotoxicity "in silico" studies in the hit finding process

Jerez MJ, Jerez M, González-García C, Ballester S and Castro A. Combined use of pharmacophoric models together with drug metabolism and genotoxicity "in silico" studies in the hit finding process. Journal of Computer-Aided Molecular Design (2013) 27-1, pp.79-90. ISSN 1573-4951 doi:10.1007/s10822-012-9627-1

PUBMED DOI

Basolateral sorting of the sodium iodide symporter (NIS) is mediated by AP-1 clathrin adaptor complexes

Koumarianou P, Fernández-Méndez C, Mielu LM, Fajardo-Delgado D, Santisteban P* and De la Vieja A*. Basolateral sorting of the sodium iodide symporter (NIS) is mediated by AP-1 clathrin adaptor complexes. Thyroid 2022. doi: 10.1089/thy.2022.0163. PMID: 35833460. NOTA: Artículo seleccionado para portada de la revista.

PUBMED DOI

Intensity distribution segmentation in ultrafast Doppler combined with scanning laser confocal microscopy for assessing vascular changes associated with ageing in murine hippocampi

Anzibar Fialho M, Vázquez Alberdi L, Martínez M, Calero M, Baranger J, Tanter M, Damián JP, Negreira C, Rubido N, Kun A, Brum J. Intensity distribution segmentation in ultrafast Doppler combined with scanning laser confocal microscopy for assessing vascular changes associated with ageing in murine hippocampi. Sci Rep. 2022 12(1):6784. doi: 10.1038/s41598-022-10457-9. Erratum in: Sci Rep. 2022 10;12(1):7626.

DOI

Age-dependent nasal immune responses in non-hospitalized bronchiolitis children

Cortegano I, Rodriguez M, Hernan-Gomez S, Arrabal A, Garcia-Vao C, Rodriguez J, et al. Age-dependent nasal immune responses in non-hospitalized bronchiolitis children. Front Immunol. 2022;13:1011607. Q1.

Structural and mechanistic insights into Streptococcus pneumoniae NADPH oxidase

Dubach VRA, San Segundo-Acosta P, Murphy BJ. Structural and mechanistic insights into Streptococcus pneumoniae NADPH oxidase. Nature Structural & Molecular Biology. 2024

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,9-dehydrohispanolone-15,16-lactol diterpene prevents LPS-triggered inflammatory response by inhibiting endothelial activation

L Jiménez-García; PG Través; R López-Fontal; S Herranz; MA Higueras; B de las Heras; S Hortelano; A Luque. 2016. 8,9-dehydrohispanolone-15,16-lactol diterpene prevents LPS-triggered inflammatory response by inhibiting endothelial activation. Biochem J. 2016 Jul 15;473(14):2061-71. https://doi.org/10.1042/BCJ20160343.

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Sprouty2 and Spred1-2 proteins inhibit the activation of the ERK pathway elicited by cyclopentenone prostanoids

García-Domínguez CA, Martínez N, Gragera T, Pérez-Rodríguez A, Retana D, León G, Sánchez A, Oliva JL, Pérez-Sala D & Rojas JM. Sprouty2 and Spred1-2 proteins inhibit the activation of the ERK pathway elicited by cyclopentenone prostanoids. PloS ONE. 2011; 6(2): e16787. doi:10.1371/journal.pone.0016787

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Effects of chlorpyrifos on cell death and cellular phenotypic specification of human neural stem cells

Effects of chlorpyrifos on cell death and cellular phenotypic specification of human neural stem cells. Sandoval L, Rosca A, Oniga A, Zambrano A, Ramos JJ, González MC, Liste I, Motas M. Sci Total Environ. 2019 Sep 15;683:445-454. doi: 10.1016/j.scitotenv.2019.05.270. Epub 2019 May 20. PMID: 31136966

PUBMED DOI

Low levels of amyloid precursor protein (APP) promote neurogenesis and decrease gliogenesis in human neural stem cells

Coronel, R.; López-Alonso, V.; Gallego, M.I.; Liste, I. (2023). Low levels of amyloid precursor protein (APP) promote neurogenesis and decrease gliogenesis in human neural stem cells. Int J Mol Sci. 24, 14635. doi: 10.3390/ijms241914635.

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Disturbed circadian rhythm and retinal degeneration in a mouse model of Alzheimer's disease

Carrero L, Antequera D, Alcalde I, Megías D, Figueiro-Silva J, Merayo-Lloves J, Municio C, Carro E. Disturbed circadian rhythm and retinal degeneration in a mouse model of Alzheimer's disease. Acta Neuropathol Commun. 2023 Mar 31;11(1):55. doi: 10.1186/s40478-023-01529-6.

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Tumor-derived pericytes driven by EGFR mutations govern the vascular and immune microenvironment of gliomas

Segura-Collar B, Garranzo-Asensio M, Herranz B, Hernández-SanMiguel E, Cejalvo T, Casas BS, Matheu A, Pérez-Núñez Á, Sepúlveda-Sánchez JM, Hernández-Laín A, Palma V, Gargini R, Sánchez-Gómez P. (2021) Tumor-derived pericytes driven by EGFR mutations govern the vascular and immune microenvironment of gliomas. Cancer Res. 81(8):2142-2156. PMID: 33593822 doi: 10.1158/0008-5472.CAN-20-3558

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Clinical and cellular consequences of the mutation m.12300G>A in the mitochondrial tRNA(Leu(CUN)

Clinical and cellular consequences of the mutation m.12300G>A in the mitochondrial tRNA(Leu(CUN). Martín Jiménez, R.; Martín Hernández, E.; Cabello, A.;García Silva, MT.; Arenas, J.; Campos, Y. 2012. Mitochondrion. 12: 288-293. DOI: 10.1016/j.mito.2011.10.004

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Intraepithelial paracrine Hedgehog signaling induces the expansion of ciliated cells that express diverse progenitor cell markers in the basal epithelium of the mouse mammary gland

García-Zaragoza, E.; Pérez-Tavarez, R.; Ballester, A.; Lafarga, V.; Jiménez- Reinoso, A.; Jiménez-Reinoso, A.; Ramírez, A.; Murillas, R. and Gallego, M.I. Intraepithelial paracrine Hedgehog signaling induces the expansion of ciliated cells that express diverse progenitor cell markers in the basal epithelium of the mouse mammary gland. Dev. Biol. (2012) 372-1, pp.28-44. PMID: 23000969 doi:10.1016/j.ydbio.2012.09.005

PUBMED DOI

Mesenchymal Stem Cells delivery in individuals with different pathologies. Multimodal tracking, safety and future applications

Belmar-López C, Vassaux G, Medel-Martinez A, Burnet J, Quintanilla M, Ramón Y Cajal S, Hernandez-Losa J, De la Vieja A*, and Martin-Duque P*. Mesenchymal Stem Cells delivery in individuals with different pathologies. Multimodal tracking, safety and future applications. International Journal of Molecular Sciences 2022 Jan 31;23(3):1682. doi: 10.3390/ijms23031682. PMID: 35163605

PUBMED DOI

Curcumin and Ethanol Effects in Trembler-J Schwann Cell Culture

Vázquez Alberdi L, Rosso G, Velóz L, Romeo C, Farias J, Di Tomaso MV, Calero M, Kun A. Curcumin and Ethanol Effects in Trembler-J Schwann Cell Culture. Biomolecules. 2022 12(4):515. doi: 10.3390/biom12040515.

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Telomere length analysis in amyotrophic lateral sclerosis using large-scale whole genome sequence data

Al Khleifat A, Iacoangeli A, Jones AR, van Vugt J, Moisse M, Shatunov A, et al. Telomere length analysis in amyotrophic lateral sclerosis using large-scale whole genome sequence data. Front Cell Neurosci. 2022;16:1050596. Q1.

Telomere length analysis in amyotrophic lateral sclerosis using large-scale whole genome sequence data

Al Khleifat A, Iacoangeli A, Jones AR, van Vugt J, Moisse M, Shatunov A, et al. Telomere length analysis in amyotrophic lateral sclerosis using large-scale whole genome sequence data. Front Cell Neurosci. 2022;16:1050596. Q1.

An HPF1/PARP1-Based Chemical Biology Strategy for Exploring ADP-Ribosylation

Bonfiglio JJ, Leidecker O, Dauben H, Longarini EJ, Colby T, San Segundo-Acosta P, Perez KA, Matic I. An HPF1/PARP1-Based Chemical Biology Strategy for Exploring ADP-Ribosylation. Cell. 2020; 183:1086-1102.e23.

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Regulation of endothelial dynamics by PGC-1alpha relies on ROS control of VEGF-A signaling Free Radic Biol Med

I Prieto; C Sánchez-Ramos; A Luque; E Arza; Y Olmos; M Monsalve. (3/6). 2016. Regulation of endothelial dynamics by PGC-1alpha relies on ROS control of VEGF-A signaling Free Radic Biol Med. 2016 Apr;93:41-51. https://doi.org/10.1016/j.freeradbiomed.2016.01.021

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Sos GEFs: old concepts and new perspectives

Rojas JM, Oliva JL & Santos E. Mammalian Sos GEFs: old concepts and new perspectives. Genes & Cancer. 2011; 2: 298-305. doi: 10.1177/1947601911408078

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Early induction of senescence and immortalization in PGC-1α-deficient mouse embryonic fibroblasts

Early induction of senescence and immortalization in PGC-1α-deficient mouse embryonic fibroblasts. Prieto I, Zambrano A, Laso J, Aranda A, Samper E, Monsalve M. Free Radic Biol Med. 2019 Jul;138:23-32. doi: 10.1016/j.freeradbiomed.2019.04.015. Epub 2019 Apr 25. PMID: 31029787.

PUBMED DOI

Amyloid precursor protein (APP) regulates gliogenesis and neurogenesis of human neural stem cells by several signaling pathways

Coronel, R.; Bernabeu-Zornoza, A.; Palmer, C.; González-Sastre, R.; Rosca, A.; Mateos-Martínez, P.; López-Alonso, V.; Liste, I. (2023). Amyloid precursor protein (APP) regulates gliogenesis and neurogenesis of human neural stem cells by several signaling pathways. Int J Mol Sci. 24, 12964. doi: 10.3390/ijms241612964.

DOI

Altered Clock Gene Expression in Female APP/PS1 Mice and Aquaporin-Dependent Amyloid Accumulation in the Retina

Carrero L, Antequera D, Alcalde I, Megias D, Ordoñez-Gutierrez L, Gutierrez C, Merayo-Lloves J, Wandosell F, Municio C, Carro E. Altered Clock Gene Expression in Female APP/PS1 Mice and Aquaporin-Dependent Amyloid Accumulation in the Retina. Int J Mol Sci. 2023 Oct 27;24(21):15679. doi: 10.3390/ijms242115679.

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Blood-Brain Barrier Disruption: A Common Driver of Central Nervous System Diseases

Segura-Collar B, Mata-Martínez P, Hernández-Laín A, Sánchez-Gómez P*, Gargini R*. (* co-corresponding) (2021) Blood-Brain Barrier Disruption: A Common Driver of Central Nervous System Diseases. The Neuroscientist. Jan 15: 1073858420985838. PMID: 33446074 doi: 10.1177/1073858420985838

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Proteomics analysis of prefrontal cortex of Alzheimer’s disease patients revealed dysregulated proteins in the disease and novel proteins associated with amyloid-β pathology

Montero-Calle, A.; Coronel, R.; Garranzo-Asensio, M.; Solís-Fernández, G.; Rábano, A.; de los Ríos, V.; Fernández-Aceñero, M.J.; Mendes, M.L.; Martínez-Useros, J.; Megías, D.; Moreno-Casbas, M.T.; Peláez-García, A.; Liste, I.; Barderas, R. (2023). Proteomics analysis of prefrontal cortex of Alzheimer’s disease patients revealed dysregulated proteins in the disease and novel proteins associated with amyloid-β pathology. Cell Mol Life Sci. 80, 141. doi: 10.1007/s00018-023-04791-y

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Human immunodeficiency virus type 1 chronic infection is associated with different gene expression in MT-4, H9 and U937 cell lines

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PUBMED DOI

The complex regulation of NIS expression and activity in thyroid and extrathyroidal tissues

Riesco-Eizaguirre G*, Santisteban P and De la Vieja A*. The complex regulation of NIS expression and activity in thyroid and extrathyroidal tissues. Endocrine-Related Cancer 2021 28(10):T141-T165. PMID: 34387194. doi: 10.1530/ERC-21-0217

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New insights into the genetic etiology of Alzheimer's disease and related dementias

Bellenguez et al. New insights into the genetic etiology of Alzheimer's disease and related dementias. Nat Genet. 2022 54(4):412-436. doi: 10.1038/s41588-022-01024-z.

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Metabolic Reprogramming Helps to Define Different Metastatic Tropisms in Colorectal Cancer

Montero-Calle A, Gomez de Cedron M, Quijada-Freire A, Solis-Fernandez G, Lopez-Alonso V, Espinosa-Salinas I, et al. Metabolic Reprogramming Helps to Define Different Metastatic Tropisms in Colorectal Cancer. Front Oncol. 2022;12:903033. Q1

Multiplexed monitoring of a novel autoantibody diagnostic signature of colorectal cancer using HaloTag technology-based electrochemical immunosensing platform

Garranzo-Asensio M, Guzmán-Aránguez A, Povedano E, Ruiz-Valdepeñas Montiel V, Poves C, Fernandez-Aceñero MJ, Montero-Calle A, Solís-Fernández G, Fernandez-Diez S, Camps J, Arenas M, Rodríguez-Tomàs E, Joven J, Sanchez-Martinez M, Rodriguez N, Dominguez G, Yáñez-Sedeño P, Pingarrón JM, Campuzano S, Barderas R. Multiplexed monitoring of a novel autoantibody diagnostic signature of colorectal cancer using HaloTag technology-based electrochemical immunosensing platform. Theranostics 2020; 10(7):3022-3034.

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Intersectin 1 enhances Cbl ubiquitylation of epidermal growth factor receptor through regulation of Sprouty2-Cbl interaction

Okur MN, Zhu JO, Fong CW, Martinez N, Garcia-Dominguez C, Rojas JM, Guy G & O'Bryan J. Intersectin 1 enhances Cbl ubiquitylation of epidermal growth factor receptor through regulation of Sprouty2-Cbl interaction. Molecular and Cellular Biology. 2012; 32(4):817-25. doi:10.1128/MCB.05647-11

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Tumor suppressor ARF regulates tissue microenvironment and tumorgrowth through modulation of macrophage polarization Oncotarget

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La Unidad de Biología Computacional de la UFIEC tiene como línea de investigación principal la aplicación de métodos computacionales para la interpretación funcional de los datos obtenidos por las tecnologías de alto rendimiento, y la posibilidad de integración de esta información con los datos clínicos para aplicaciones diagnósticas y terapéuticas de enfermedades crónicas.

 

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Contenidos con Investigacion Biología Computacional .