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Investigación

Biología Computacional

Líneas de investigación

Contenidos con Investigacion Biología Computacional .

Biología Computacional

  • Uso de la Biología Computacional para investigación de mecanismos moleculares alterados en enfermedades crónicas (neurodegeneración y cancer) que puedan contribuir a prevenir, diagnosticar precozmente, y tratar la enfermedad de manera individualizada. 
  • Búsqueda e interpretación de vías de señalización, variantes génicas y genes biomarcadores obtenidos por técnicas de secuenciación profunda y técnicas de genotipado masivo.

Proyectos de investigación

Contenidos con Investigacion Biología Computacional .

  • 2022-2025: Modelos humanos neurales para estudiar la evolución celular y proteómica en la enfermedad de Alzheimer. PI22/00055. Proyecto de Acción Estratégica en Salud Intramural. PI I Liste, CoIP V. López-Alonso.
  • 2022-2024: CAM Ayudas para la contratación de técnico de Garantia Juvenil
  • 2022-2025: Medicina Personalizada (MedPer) en la detección precoz del deterioro cognitivo (DC) preclínico. Desarrollo de un modelo predictivo de riesgo. PMP22/00084. Proyectos de Investigación de Medicina Personalizada de Precisión de la Acción Estratégica en Salud. IP. A. Almeida Parra.
  • 2022-2025: Implicaciones de la proteína precursora amiloide (APP): neurodesarrollo y enfermedad de Alzheimer. PID2021-126715OB-I00. Programa Estatal de I+D+i Orientada a los Retos de la Sociedad. Ministerio de Ciencia e Innovación. PI I. Liste
  • From 2017-2022. Project MinE International groundbreaking genetic ALS research (www.projectmine.com).
  • 2020 – 2022: ELA-BASE: Una cohorte para un estudio piloto longitudinal de Medicina de Precisión en Esclerosis Lateral Amiotrófica (ELA). UFIECPY 354/19-TS.Actividad Singular dentro del Programa de prestación de servicios científico-técnicos en los centros del ISCIII. Programa Intramural 2019 ISCIII. PI Y. Campos.
  • 2020–2021: Spanish Ministry of Economy and Competitiveness: Ayudas para la contratación de estudiantes, Garantia Juvenil. V. López-Alonso
  • 01/04/2015 - 01/04/2021: New therapeutic strategies for resistant colorectal cancer. Fundación Científica de la Asociación Española Contra el Cáncer. CGB14142035THOM.  PI JM Rojas. 
  • 2017-2020: MicroRNAs y marcadores de metabolismo lipídico como potencial enlace entre la disfunción vascular y la patofisiología de la enfermedad de Alzheimer. SAF2016-78603-R MINECO. PI M Medina.
  • 2017-2020: Papel fisiológico de la proteína Shoc2/Sur8 y estudio de su implicación en patologías humanas. SAF2016-78852-R MINECO. PI JM Rojas.
  • 2019: Proyecto MinE: del análisis biocomputacional de genomas de pacientes con Esclerosis Lateral Amiotrófica al desarrollo de un modelo de motoneurona diferenciada a partir de células madre pluripotenciales inducidas obtenidas de cultivos de fibroblastos humanos de origen dérmico. GGVP 345/18 FUNDELA. IP Y Campos.
  • 2011-2013. IMBIOMEDvision: Promoting and Monitoring Biomedical Informatics in Europa Grant agreement no: 270107 Comisión Europea. IP V López-Alonso
  • 2011-2012. COMBIOMED. Red Temática de Investigación Cooperativa en Biomedicina Computacional RD07/0067/00 Fondo de Investigación Sanitaria. Instituto de Salud Carlos III. IP y Coordinación V. López-Alonso
     
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Publicaciones destacadas

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p53 and p63 Proteoforms Derived from Alternative Splicing Possess Differential Seroreactivity in Colorectal Cancer with Distinct Diagnostic Ability from the Canonical Proteins

Montero-Calle A, Garranzo-Asensio M, Torrente-Rodríguez RM, Ruiz-Valdepeñas Montiel V, Poves C, Dziaková J, Sanz R, Díaz del Arco C, Pingarrón JM, Fernández-Aceñero MJ, et al. p53 and p63 Proteoforms Derived from Alternative Splicing Possess Differential Seroreactivity in Colorectal Cancer with Distinct Diagnostic Ability from the Canonical Proteins. Cancers. 2023; 15(7):2102.

DOI

Líneas estratégicas de las Tecnologías de la Información y las Comunicaciones en Salud Ciencia y Tecnología para el desarrollo 2013

Aguiló Llobet J, Freire Veiga A, Iglesia Jiménez D, López Alonso V, Pazos Sierra A. Líneas estratégicas de las Tecnologías de la Información y las Comunicaciones en Salud Ciencia y Tecnología para el desarrollo 2013. CYTED. ISBN 978-84-15413-18-9.

Central Alteration in Peripheral Neuropathy of Trembler-J Mice: Hippocampal pmp22 Expression and Behavioral Profile in Anxiety Tests

Damián JP, Vázquez Alberdi L, Canclini L, Rosso G, Bravo SO, Martínez M, Uriarte N, Ruiz P, Calero M, Di Tomaso MV, Kun A. Central Alteration in Peripheral Neuropathy of Trembler-J Mice: Hippocampal pmp22 Expression and Behavioral Profile in Anxiety Tests. Biomolecules. 2021 11(4):601. doi: 10.3390/biom11040601.

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Mitochondrial RNA methyltransferase TRMT61B is a new, potential biomarker and therapeutic target for highly aneuploid cancers

Martín, A., Epifano, C., Vilaplana-Marti, B. et al. Mitochondrial RNA methyltransferase TRMT61B is a new, potential biomarker and therapeutic target for highly aneuploid cancers. Cell Death Differ 30, 37–53 (2023)

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Microarray detection and characterization of bacterial foodborne pathogens

López-Campos GH, Martinez-Suarez JV, Aguado-Urda M, López-Alonso V. Microarray detection and characterization of bacterial foodborne pathogens. Springer Briefings in Food, Health and Nutrition. 2012, 1-123

Common variants in Alzheimer's disease and risk stratification by polygenic risk scores

de Rojas I, et al. Common variants in Alzheimer's disease and risk stratification by polygenic risk scores. Nat Commun. 2021 12(1):3417. doi: 10.1038/s41467-021-22491-8.

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Micromotor-based electrochemical immunoassays for reliable determination of amyloid-β (1–42) in Alzheimer's diagnosed clinical samples

Gordón Pidal JM, Moreno-Guzmán M, Montero-Calle A, Valverde A, Pingarrón JM, Campuzano S, Calero M, Barderas R, López MA, Escarpa A. Micromotor-based electrochemical immunoassays for reliable determination of amyloid-β (1–42) in Alzheimer's diagnosed clinical samples. Biosensors and Bioelectronics. 2024; 249:115988

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Electrochemical immunoplatform to unravel neurodegeneration and Alzheimer's disease through the determination of neurofilament light protein

Valverde, A., Montero‐Calle, A., Barderas, R., Calero, M., Yáñez-Sedeño, P., Campuzano, S., & Pingarrón, J.M. (2021). Electrochemical immunoplatform to unravel neurodegeneration and Alzheimer's disease through the determination of neurofilament light protein. Electrochimica Acta, 371, 137815. ISSN 0013-4686. doi.org/10.1016/j.electacta.2021.137815

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Tecnologías NBIC en salud. El papel protagonista de la Nanociencia. Aplicaciones de especial interés al Cancer Colorectal Ciencia y Tecnología para el desarrollo CYTED

Aguiló J, Freire, A, de la Iglesia, D, López-Alonso V, Pazos, A. Tecnologías NBIC en salud. El papel protagonista de la Nanociencia. Aplicaciones de especial interés al Cancer Colorectal Ciencia y Tecnología para el desarrollo CYTED. 2012: 1-89. ISBN 978-84-15413-15-8

Dual detection system for cancer-associated point mutations assisted by a multiplexed LNA-based amperometric bioplatform coupled with rolling circle amplification

Sebuyoya R, Valverde A, Moranova L, Strmiskova J, Hrstka R, Ruiz-Valdepeñas Montiel V, Pingarrón JM, Barderas R, Campuzano S, Bartosik M. Dual detection system for cancer-associated point mutations assisted by a multiplexed LNA-based amperometric bioplatform coupled with rolling circle amplification. Sensors and Actuators B: Chemical. 2023; 394:134375

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Association of clusterin with the BRI2-derived amyloid molecules ABri and ADan

Rostagno A, Calero M, Holton JL, Revesz T, Lashley T, Ghiso J. Association of clusterin with the BRI2-derived amyloid molecules ABri and ADan. Neurobiol Dis. 2021 158:105452. doi: 10.1016/j.nbd.2021.105452.

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Advances in biomedical informatics. COMBIOMED Fundación Universidade da Coruña

López V, Loza M, Martín F, Pazos A. Advances in biomedical informatics. COMBIOMED Fundación Universidade da Coruña. 2011. ISBN 978-8497494779.

Breaking barriers in electrochemical biosensing using bioinspired peptide and phage probes

Campuzano, S., Pedrero, M., Barderas, R., Pingarrón, JM. Breaking barriers in electrochemical biosensing using bioinspired peptide and phage probes. Anal Bioanal Chem (2024)

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Residence, Clinical Features, and Genetic Risk Factors Associated with Symptoms of COVID-19 in a Cohort of Older People in Madrid

Del Ser T, Fernández-Blázquez MA, Valentí M, Zea-Sevilla MA, Frades B, Alfayate E, Saiz L, Calero O, García-López FJ, Rábano A, Medina M, Calero M. Residence, Clinical Features, and Genetic Risk Factors Associated with Symptoms of COVID-19 in a Cohort of Older People in Madrid. Gerontology. 2021 67(3):281-289. doi: 10.1159/000513182.

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Clinical relevance of colorectal cancer molecular subtypes

Rodriguez-Salas N, Dominguez G, Barderas R, Mendiola M, García-Albéniz X, Maurel J, Batlle JF. Clinical relevance of colorectal cancer molecular subtypes. Crit Rev Oncol Hematol. 2017;109:9-19

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Informática Biomédica

Martín Sánchez F, López Alonso V. Informática Biomédica. 2004. COMBIOMED. pp.1-289

The Neuromelanin Paradox and Its Dual Role in Oxidative Stress and Neurodegeneration

Moreno-García A, Kun A, Calero M, Calero O. The Neuromelanin Paradox and Its Dual Role in Oxidative Stress and Neurodegeneration. Antioxidants (Basel). 2021 10(1):124. doi: 10.3390/antiox10010124.

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Protein Microarrays in Neurodegenerative Diseases. Current Proteomic Approaches Applied to Brain Function

Pablo San Segundo-Acosta, María Garranzo-Asensio, Ana Montero-Calle, Carmen Oeo-Santos, Mayte Villalba, Ana Guzmán-Aránguez, Rodrigo Barderas. Protein Microarrays in Neurodegenerative Diseases. Current Proteomic Approaches Applied to Brain Function. Neuromethods. Springer. ISBN: 978-1-4939-7118-3. 2017

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Identification of novel risk loci and causal insights for sporadic Creutzfeldt-Jakob disease: a genome-wide association study

Jones E, Hummerich H, Viré E, Uphill J, Dimitriadis A, Speedy H, Campbell T, Norsworthy P, Quinn L, Whitfield J, Linehan J, Jaunmuktane Z, Brandner S, Jat P, Nihat A, How Mok T, Ahmed P, Collins S, Stehmann C, Sarros S, Kovacs GG, Geschwind MD, Golubjatnikov A, Frontzek K, Budka H, Aguzzi A, Karamujić-Čomić H, van der Lee SJ, Ibrahim-Verbaas CA, van Duijn CM, Sikorska B, Golanska E, Liberski PP, Calero M, Calero O, Sanchez-Juan P, Salas A, Martinón-Torres F, Bouaziz-Amar E, Haïk S, Laplanche JL, Brandel JP, Amouyel P, Lambert JC, Parchi P, Bartoletti-Stella A, Capellari S, Poleggi A, Ladogana A, Pocchiari M, Aneli S, Matullo G, Knight R, Zafar S, Zerr I, Booth S, Coulthart MB, Jansen GH, Glisic K, Blevins J, Gambetti P, Safar J, Appleby B, Collinge J, Mead S. Identification of novel risk loci and causal insights for sporadic Creutzfeldt-Jakob disease: a genome-wide association study. Lancet Neurol. 2020 19(10):840-848. doi: 10.1016/S1474-4422(20)30273-8.

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The specific seroreactivity to ∆Np73 isoforms shows higher diagnostic ability in colorectal cancer patients than the canonical p73 protein

Garranzo-Asensio, M., Guzmán-Aránguez, A., Povés, C. et al, Barderas, R. The specific seroreactivity to ∆Np73 isoforms shows higher diagnostic ability in colorectal cancer patients than the canonical p73 protein. Sci Rep 9, 13547 (2019)

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Diagnostic Accuracy of Prion Disease Biomarkers in Iatrogenic Creutzfeldt-Jakob Disease

Llorens F, Villar-Piqué A, Hermann P, Schmitz M, Calero O, Stehmann C, Sarros S, Moda F, Ferrer I, Poleggi A, Pocchiari M, Catania M, Klotz S, O'Regan C, Brett F, Heffernan J, Ladogana A, Collins SJ, Calero M, Kovacs GG, Zerr I. Diagnostic Accuracy of Prion Disease Biomarkers in Iatrogenic Creutzfeldt-Jakob Disease. Biomolecules. 2020 10(2):290. doi: 10.3390/biom10020290.

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Electrochemical immunosensor for IL-13 Receptor α2 determination and discrimination of metastatic colon cancer cells. Biosensors and Bioelectronics

Alejandro Valverde, Eloy Povedano, Víctor Ruiz-Valdepeñas Montiel, Paloma Yáñez-Sedeño, María Garranzo-Asensio, Rodrigo Barderas, Susana Campuzano, José M. Pingarrón. Electrochemical immunosensor for IL-13 Receptor α2 determination and discrimination of metastatic colon cancer cells. Biosensors and Bioelectronics. 2018; 117: 766-772.

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An electrochemical immunosensor using gold nanoparticles-PAMAM-nanostructured screen-printed carbon electrodes for tau protein determination in plasma and brain tissues from Alzheimer patients

Razzino CA, Serafín V, Gamella M, Pedrero M, Montero-Calle A, Barderas R, Calero M, Lobo AO, Yáñez-Sedeño P, Campuzano S, Pingarrón JM. An electrochemical immunosensor using gold nanoparticles-PAMAM-nanostructured screen-printed carbon electrodes for tau protein determination in plasma and brain tissues from Alzheimer patients. Biosens Bioelectron. 2020 163:112238. doi: 10.1016/j.bios.2020.

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Determination of Cadherin-17 in Tumor Tissues of Different Metastatic Grade Using a Single Incubation-Step Amperometric Immunosensor

Alejandro Valverde, Eloy Povedano, Víctor Ruiz-Valdepeñas Montiel, Paloma Yáñez-Sedeño, María Garranzo-Asensio, Nuria Rodríguez, Gemma Domínguez, Rodrigo Barderas, Susana Campuzano, José M. Pingarrón. Determination of Cadherin-17 in Tumor Tissues of Different Metastatic Grade Using a Single Incubation-Step Amperometric Immunosensor. Analytical Chemistry 2018 90 (18), 11161-11167

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Prodromal Alzheimer's Disease: Constitutive Upregulation of Neuroglobin Prevents the Initiation of Alzheimer's Pathology

de Vidania S, Palomares-Perez I, Frank-García A, Saito T, Saido TC, Draffin J, Szaruga M, Chávez-Gutierrez L, Calero M, Medina M, Guix FX, Dotti CG. Prodromal Alzheimer's Disease: Constitutive Upregulation of Neuroglobin Prevents the Initiation of Alzheimer's Pathology. Front Neurosci. 2020 14:562581. doi: 10.3389/fnins.2020.562581.

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Toward Liquid Biopsy: Determination of the Humoral Immune Response in Cancer Patients Using HaloTag Fusion Protein-Modified Electrochemical Bioplatforms

Garranzo-Asensio M, Guzmán-Aránguez A, Povés C, Fernández-Aceñero MJ, Torrente-Rodríguez RM, Ruiz-Valdepeñas Montiel V, Domínguez G, Frutos LS, Rodríguez N, Villalba M, Pingarrón JM, Campuzano S, Barderas R. Toward Liquid Biopsy: Determination of the Humoral Immune Response in Cancer Patients Using HaloTag Fusion Protein-Modified Electrochemical Bioplatforms. Anal Chem. 2016;88(24):12339-12345

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Evaluation of Human Cerebrospinal Fluid Malate Dehydrogenase 1 as a Marker in Genetic Prion Disease Patients

Zerr I, Villar-Piqué A, Schmitz VE, Poleggi A, Pocchiari M, Sánchez-Valle R, Calero M, Calero O, Baldeiras I, Santana I, Kovacs GG, Llorens F, Schmitz M. Evaluation of Human Cerebrospinal Fluid Malate Dehydrogenase 1 as a Marker in Genetic Prion Disease Patients. Biomolecules. 2019 9(12):800. doi: 10.3390/biom9120800.

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Identification of Alzheimer’s Disease Autoantibodies and Their Target Biomarkers by Phage Microarrays

Pablo San Segundo-Acosta, Ana Montero-Calle, Manuel Fuentes, Alberto Rábano, Mayte Villalba, and Rodrigo Barderas. Identification of Alzheimer’s Disease Autoantibodies and Their Target Biomarkers by Phage Microarrays. Journal of Proteome Research. 2019; 18: 2940-2953

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Cerebrospinal Fluid Total Prion Protein in the Spectrum of Prion Diseases

Villar-Piqué A, Schmitz M, Lachmann I, Karch A, Calero O, Stehmann C, Sarros S, Ladogana A, Poleggi A, Santana I, Ferrer I, Mitrova E, Žáková D, Pocchiari M, Baldeiras I, Calero M, Collins SJ, Geschwind MD, Sánchez-Valle R, Zerr I, Llorens F. Cerebrospinal Fluid Total Prion Protein in the Spectrum of Prion Diseases. Mol Neurobiol. 2019 56(4):2811–2821. doi: 10.1007/s12035-018-1251-1.

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The 2018 Nobel Prize in Chemistry: phage display of peptides and antibodies

Barderas, R., Benito-Peña, E. The 2018 Nobel Prize in Chemistry: phage display of peptides and antibodies. Anal Bioanal Chem 411, 2475–2479 (2019)

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Age at onset in genetic prion disease and the design of preventive clinical trials

Minikel EV, Vallabh SM, Orseth MC, Brandel JP, Haïk S, Laplanche JL, Zerr I, Parchi P, Capellari S, Safar J, Kenny J, Fong JC, Takada LT, Ponto C, Hermann P, Knipper T, Stehmann C, Kitamoto T, Ae R, Hamaguchi T, Sanjo N, Tsukamoto T, Mizusawa H, Collins SJ, Chiesa R, Roiter I, de Pedro-Cuesta J, Calero M, Geschwind MD, Yamada M, Nakamura Y, Mead S. Age at onset in genetic prion disease and the design of preventive clinical trials. Neurology. 2019 93(2):e125-e134. doi: 10.1212/WNL.0000000000007745.

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Mapping the Spatial Proteome of Metastatic Cells in Colorectal Cancer

Marta Mendes, Alberto Peláez-García, María López-Lucendo, Rubén A. Bartolomé, Eva Calviño, Rodrigo Barderas, J. Ignacio Casal. Mapping the Spatial Proteome of Metastatic Cells in Colorectal Cancer. Proteomics 2017;17: 1700094.

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Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project

Moreno-Grau S, de Rojas I, Hernández I, Quintela I, Montrreal L, Alegret M, Hernández-Olasagarre B, Madrid L, González-Perez A, Maroñas O, Rosende-Roca M, Mauleón A, Vargas L, Lafuente A, Abdelnour C, Rodríguez-Gómez O, Gil S, Santos-Santos MÁ, Espinosa A, Ortega G, Sanabria Á, Pérez-Cordón A, Cañabate P, Moreno M, Preckler S, Ruiz S, Aguilera N, Pineda JA, Macías J, Alarcón-Martín E, Sotolongo-Grau O; GR@ACE consortium; DEGESCO consortium; Alzheimer's Disease Neuroimaging Initiative, Marquié M, Monté-Rubio G, Valero S, Benaque A, Clarimón J, Bullido MJ, García-Ribas G, Pástor P, Sánchez-Juan P, Álvarez V, Piñol-Ripoll G, García-Alberca JM, Royo JL, Franco E, Mir P, Calero M, Medina M, Rábano A, Ávila J, Antúnez C, Real LM, Orellana A, Carracedo Á, Sáez ME, Tárraga L, Boada M, Ruiz A. Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project. Alzheimers Dement. 2019 15(10):1333-1347. doi: 10.1016/j.jalz.2019.06.4950.

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Proteomic mapping of p53 immunogenicity in pancreatic, ovarian, and breast cancers

Katchman BA, Barderas R, Alam R, Chowell D, Field MS, Esserman LJ, Wallstrom G, LaBaer J, Cramer DW, Hollingsworth MA, Anderson KS. Proteomic mapping of p53 immunogenicity in pancreatic, ovarian, and breast cancers. Proteomics Clin Appl. 2016 Jul;10(7):720-31.

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Genetic Prion Disease Patients

Genetic Prion Disease Patients. Biomolecules. 2019 Nov 28;9(12):800. doi: 10.3390/biom9120800.

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Elevated Plasma microRNA-206 Levels Predict Cognitive Decline and Progression to Dementia from Mild Cognitive Impairment

Kenny A, McArdle H, Calero M, Rabano A, Madden SF, Adamson K, Forster R, Spain E, Prehn JHM, Henshall DC, Medina M, Jimenez-Mateos EM, Engel T. Elevated Plasma microRNA-206 Levels Predict Cognitive Decline and Progression to Dementia from Mild Cognitive Impairment. Biomolecules. 2019 9(11):734. doi: 10.3390/biom9110734.

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Reconciling etiological views on Parkinson's disease

de Pedro-Cuesta J, Martínez-Martín P, Calero M, Almazán-Isla J, García López FJ. Reconciling etiological views on Parkinson's disease. Mov Disord. 2019 34(11):1750-1752. doi: 10.1002/mds.27875.

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Aβ42 Peptide Promotes Proliferation and Gliogenesis in Human Neural Stem Cells

Bernabeu-Zornoza A, Coronel R, Palmer C, Calero M, Martínez-Serrano A, Cano E, Zambrano A, Liste I. Aβ42 Peptide Promotes Proliferation and Gliogenesis in Human Neural Stem Cells. Mol Neurobiol. 2019 56(6):4023-4036. doi: 10.1007/s12035-018-1355-7.

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An Overview of the Role of Lipofuscin in Age-Related Neurodegeneration

Moreno-García A, Kun A, Calero O, Medina M, Calero M. An Overview of the Role of Lipofuscin in Age-Related Neurodegeneration. Front Neurosci. 2018 12:464. doi: 10.3389/fnins.2018.00464.

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Frontotemporal lobar degeneration: Study of a clinicopathological cohort

Gil MJ, Manzano MS, Cuadrado ML, Fernández C, Góméz E, Matesanz C, Calero M, Rábano A. Frontotemporal lobar degeneration: Study of a clinicopathological cohort. J Clin Neurosci. 2018 58:172-180. doi: 10.1016/j.jocn.2018.10.024.

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Nephrotic syndrome associated with severe hypertriglyceridemia in a pediatric patient: Questions

Corredor-Andrés B, Muñoz-Calvo MT, Calero O, Aparicio C, Argente J, Calero M. Nephrotic syndrome associated with severe hypertriglyceridemia in a pediatric patient: Questions. Pediatr Nephrol. 2018 33(11):2073-2074. doi.org/10.1007/s00467-018-3894-6.

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Nephrotic syndrome associated with severe hypertriglyceridemia in a pediatric patient: Answers

Corredor-Andrés B, Muñoz-Calvo MT, Calero O, Aparicio C, Argente J, Calero M. Nephrotic syndrome associated with severe hypertriglyceridemia in a pediatric patient: Answers. Pediatr Nephrol. 2018 33(11):2075-2078. doi: 10.1007/s00467-018-3919-1.

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Argyrophilic Grain Pathology in Frontotemporal Lobar Degeneration: Demographic, Clinical, Neuropathological, and Genetic Features

Gil MJ, Manzano MS, Cuadrado ML, Fernández C, Góméz E, Matesanz C, Calero M, Rábano A. Argyrophilic Grain Pathology in Frontotemporal Lobar Degeneration: Demographic, Clinical, Neuropathological, and Genetic Features. J Alzheimers Dis. 2018 63(3):1109-1117. doi: 10.3233/JAD-171115.

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Decreased generation of C-terminal fragments of ApoER2 and increased reelin expression in Alzheimer's disease

Mata-Balaguer T, Cuchillo-Ibañez I, Calero M, Ferrer I, Sáez-Valero J. Decreased generation of C-terminal fragments of ApoER2 and increased reelin expression in Alzheimer's disease. FASEB J. 2018 9:fj201700736RR. doi: 10.1096/fj.201700736RR.

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Detecting Circulating MicroRNAs as Biomarkers in Alzheimer's Disease

Kenny A, Jimenez-Mateos EM, Calero M, Medina M, Engel T. Detecting Circulating MicroRNAs as Biomarkers in Alzheimer's Disease. Methods Mol Biol. 2018 1779:471-484. doi: 10.1007/978-1-4939-7816-8_29.

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A fast and cost-effective method for apolipoprotein E isotyping as an alternative to APOE genotyping for patient screening and stratification

Calero O, García-Albert L, Rodríguez-Martín A, Veiga S, Calero M. A fast and cost-effective method for apolipoprotein E isotyping as an alternative to APOE genotyping for patient screening and stratification. Sci Rep. 2018 8(1):5969. doi: 10.1038/s41598-018-24320-3.

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Cerebrospinal fluid neurofilament light levels in neurodegenerative dementia: Evaluation of diagnostic accuracy in the differential diagnosis of prion diseases

Zerr I, Schmitz M, Karch A, Villar-Piqué A, Kanata E, Golanska E, Díaz-Lucena D, Karsanidou A, Hermann P, Knipper T, Goebel S, Varges D, Sklaviadis T, Sikorska B, Liberski PP, Santana I, Ferrer I, Zetterberg H, Blennow K, Calero O, Calero M, Ladogana A, Sánchez-Valle R, Baldeiras I, Llorens F. Cerebrospinal fluid neurofilament light levels in neurodegenerative dementia: Evaluation of diagnostic accuracy in the differential diagnosis of prion diseases. Alzheimers Dement. 2018 14:751-763. doi: 10.1016/j.jalz.2017.12.008.

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Risk of transmission of sporadic Creutzfeldt-Jakob disease by surgical procedures: systematic reviews and quality of evidence

López FJG, Ruiz-Tovar M, Almazán-Isla J, Alcalde-Cabero E, Calero M, de Pedro-Cuesta J. Risk of transmission of sporadic Creutzfeldt-Jakob disease by surgical procedures: systematic reviews and quality of evidence. Euro Surveill. 2017 22(43). doi: 10.2807/1560-7917.ES.2017.22.43.

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MicroRNA Profile in Patients with Alzheimer's Disease: Analysis of miR-9-5p and miR-598 in Raw and Exosome Enriched Cerebrospinal Fluid Samples

Riancho J, Vázquez-Higuera JL, Pozueta A, Lage C, Kazimierczak M, Bravo M, Calero M, Gonalezález A, Rodríguez E, Lleó A, Sánchez-Juan P. MicroRNA Profile in Patients with Alzheimer's Disease: Analysis of miR-9-5p and miR-598 in Raw and Exosome Enriched Cerebrospinal Fluid Samples. J Alzheimers Dis. 2017 57(2):483-491. doi: 10.3233/JAD-161179.

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Early diagnosis of mild cognitive impairment and Alzheimer's disease based on salivary lactoferrin

Carro E, Bartolomé F, Bermejo-Pareja F, Villarejo-Galende A, Molina JA, Ortiz P, Calero M, Rabano A, Cantero JL, Orive G. Early diagnosis of mild cognitive impairment and Alzheimer's disease based on salivary lactoferrin. Alzheimers Dement (Amst). 2017 8:131-138. doi: 10.1016/j.dadm.2017.04.002. eCollection 2017.

Drivers: A Biologically Contextualized, Cross-Inferential View of the Epidemiology of Neurodegenerative Disorders

de Pedro-Cuesta J, Martínez-Martín P, Rábano A, Alcalde-Cabero E, José García López F, Almazán-Isla J, Ruiz-Tovar M, Medrano MJ, Avellanal F, Calero O, Calero M. Drivers: A Biologically Contextualized, Cross-Inferential View of the Epidemiology of Neurodegenerative Disorders. J Alzheimers Dis. 2016 51(4):1003-1022. doi: 10.3233/JAD-150884.

DOI

Development of a novel multiplex beads-based assay for autoantibody detection for colorectal cancer diagnosis

Villar-Vázquez R, Padilla G, Fernández-Aceñero MJ, Suárez A, Fuente E, Pastor C, Calero M, Barderas R, Casal JI. Development of a novel multiplex beads-based assay for autoantibody detection for colorectal cancer diagnosis. Proteomics. 2016 16(8):1280-90. doi: 10.1002/pmic.201500413.

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Etiologic Framework for the Study of Neurodegenerative Disorders as Well as Vascular and Metabolic Comorbidities on the Grounds of Shared Epidemiologic and Biologic Features

de Pedro-Cuesta J, Martínez-Martín P, Rábano A, Ruiz-Tovar M, Alcalde-Cabero E, Calero M. Etiologic Framework for the Study of Neurodegenerative Disorders as Well as Vascular and Metabolic Comorbidities on the Grounds of Shared Epidemiologic and Biologic Features. Front Aging Neurosci. 2016 8:138. doi: 10.3389/fnagi.2016.00138. eCollection 2016.

DOI

Exome Aggregation Consortium (ExAC), Daly MJ, MacArthur DG. Quantifying prion disease penetrance using large population control cohorts

Minikel EV, Vallabh SM, Lek M, Estrada K, Samocha KE, Sathirapongsasuti JF, McLean CY, Tung JY, Yu LP, Gambetti P, Blevins J, Zhang S, Cohen Y, Chen W, Yamada M, Hamaguchi T, Sanjo N, Mizusawa H, Nakamura Y, Kitamoto T, Collins SJ, Boyd A, Will RG, Knight R, Ponto C, Zerr I, Kraus TF, Eigenbrod S, Giese A, Calero M, de Pedro-Cuesta J, Haïk S, Laplanche JL, Bouaziz-Amar E, Brandel JP, Capellari S, Parchi P, Poleggi A, Ladogana A, O'Donnell-Luria AH, Karczewski KJ, Marshall JL, Boehnke M, Laakso M, Mohlke KL, Kähler A, Chambert K, McCarroll S, Sullivan PF, Hultman CM, Purcell SM, Sklar P, van der Lee SJ, Rozemuller A, Jansen C, Hofman A, Kraaij R, van Rooij JG, Ikram MA, Uitterlinden AG, van Duijn CM; Exome Aggregation Consortium (ExAC), Daly MJ, MacArthur DG. Quantifying prion disease penetrance using large population control cohorts. Sci Transl Med. 2016 8(322):322ra9. doi: 10.1126/scitranslmed.aad5169.

DOI

Combined Alzheimer's disease and cerebrovascular staging explains advanced dementia cognition

Zea-Sevilla MA, Fernández-Blázquez MA, Calero M, Bermejo-Velasco P, Rábano A. Combined Alzheimer's disease and cerebrovascular staging explains advanced dementia cognition. Alzheimers Dement. 2015 11(11):1358-66. doi: 10.1016/j.jalz.2015.01.004.

DOI

MAPT H1 Haplotype is Associated with Late-Onset Alzheimer's Disease Risk in APOEɛ4 Noncarriers: Results from the Dementia Genetics Spanish Consortium

59. Pastor P, Moreno F, Clarimón J, Ruiz A, Combarros O, Calero M, de Munain AL, Bullido MJ, de Pancorbo MM, Carro E, Antonell A, Coto E, Ortega-Cubero S, Hernandez I, Tárraga L, Boada M, Lleó A, Dols-Icardo O, Kulisevsky J, Vázquez-Higuera JL, Infante J, Rábano A, Fernández-Blázquez MÁ, Valentí M, Indakoetxea B, Barandiarán M, Gorostidi A, Frank-García A, Sastre I, Lorenzo E, Pastor MA, Elcoroaristizabal X, Lennarz M, Maier W, Rámirez A, Serrano-Ríos M, Lee SE, Sánchez-Juan P. MAPT H1 Haplotype is Associated with Late-Onset Alzheimer's Disease Risk in APOEɛ4 Noncarriers: Results from the Dementia Genetics Spanish Consortium. J Alzheimers Dis. 2015 49(2):343-52. doi: 10.3233/JAD-150555.

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Additional mechanisms conferring genetic susceptibility to Alzheimer's disease

Calero M, Gómez-Ramos A, Calero O, Soriano E, Avila J, Medina M. Additional mechanisms conferring genetic susceptibility to Alzheimer's disease. Front Cell Neurosci. 2015 9:138. doi: 10.3389/fncel.2015.00138.

DOI

A genome wide association study links glutamate receptor pathway to sporadic Creutzfeldt-Jakob disease risk

Sanchez-Juan P, Bishop MT, Kovacs GG, Calero M, Aulchenko YS, Ladogana A, Boyd A, Lewis V, Ponto C, Calero O, Poleggi A, Carracedo Á, van der Lee SJ, Ströbel T, Rivadeneira F, Hofman A, Haïk S, Combarros O, Berciano J, Uitterlinden AG, Collins SJ, Budka H, Brandel JP, Laplanche JL, Pocchiari M, Zerr I, Knight RS, Will RG, van Duijn CM. A genome wide association study links glutamate receptor pathway to sporadic Creutzfeldt-Jakob disease risk. PLoS One. 2015 10(4):e0123654. doi: 10.1371/journal.pone.0123654.

DOI

Amyloid precursor protein metabolism and inflammation markers in preclinical Alzheimer disease

Alcolea D, Martínez-Lage P, Sánchez-Juan P, Olazarán J, Antúnez C, Izagirre A, Ecay-Torres M, Estanga A, Clerigué M, Guisasola MC, Sánchez Ruiz D, Marín Muñoz J, Calero M, Blesa R, Clarimón J, Carmona-Iragui M, Morenas-Rodríguez E, Rodríguez-Rodríguez E, Vázquez Higuera JL, Fortea J, Lleó A. Amyloid precursor protein metabolism and inflammation markers in preclinical Alzheimer disease. Neurology. 2015 85(7):626-33. doi: 10.1212/WNL.0000000000001859.

DOI

Validation of 14-3-3 Protein as a Marker in Sporadic Creutzfeldt-Jakob Disease Diagnostic

Schmitz M, Ebert E, Stoeck K, Karch A, Collins S, Calero M, Sklaviadis T, Laplanche JL, Golanska E, Baldeiras I, Satoh K, Sanchez-Valle R, Ladogana A, Skinningsrud A, Hammarin AL, Mitrova E, Llorens F, Kim YS, Green A, Zerr I. Validation of 14-3-3 Protein as a Marker in Sporadic Creutzfeldt-Jakob Disease Diagnostic. Mol Neurobiol. 2015

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La Unidad de Biología Computacional de la UFIEC tiene como línea de investigación principal la aplicación de métodos computacionales para la interpretación funcional de los datos obtenidos por las tecnologías de alto rendimiento, y la posibilidad de integración de esta información con los datos clínicos para aplicaciones diagnósticas y terapéuticas de enfermedades crónicas.

 

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Contenidos con Investigacion Biología Computacional .